[1] "Fri Apr 24 15:08:11 2026" [1] "Analyzing 251218a" [1] "Reading in raw Picarro user data files" [1] "CFKBDS2303-20251218-192608Z-DataLog_User.dat" Read 5453 records [1] "CFKBDS2303-20251218-202614Z-DataLog_User.dat" Read 5466 records [1] "CFKBDS2303-20251218-212618Z-DataLog_User.dat" Read 5494 records [1] "CFKBDS2303-20251218-222624Z-DataLog_User.dat" Read 5494 records [1] "CFKBDS2303-20251218-232629Z-DataLog_User.dat" Read 5563 records [1] "CFKBDS2303-20251219-002634Z-DataLog_User.dat" Read 5520 records [1] "CFKBDS2303-20251219-012639Z-DataLog_User.dat" Read 5487 records [1] "CFKBDS2303-20251219-022644Z-DataLog_User.dat" Read 5511 records [1] "CFKBDS2303-20251219-032650Z-DataLog_User.dat" Read 2241 records [1] "Converting time stamp" [1] "Median sample interval = 2.62 secs" [1] "Median CO2 sample interval = 0.25 seconds" [1] "Median CH4 sample interval = 0.45 seconds" [1] "Median CO sample interval = 1.06 seconds" [1] "Median H2O sample interval = 0.86 seconds" [1] "Reading in raw Picarro sensor data files" [1] "CFKBDS2303-20251218-190110Z-DataLog_User_Sensors.dat" Read 89 records [1] "CFKBDS2303-20251218-190545Z-DataLog_User_Sensors.dat" Read 965 records [1] "CFKBDS2303-20251218-200552Z-DataLog_User_Sensors.dat" Read 721 records [1] "CFKBDS2303-20251218-210557Z-DataLog_User_Sensors.dat" Read 721 records [1] "CFKBDS2303-20251218-220602Z-DataLog_User_Sensors.dat" Read 721 records [1] "CFKBDS2303-20251218-230607Z-DataLog_User_Sensors.dat" Read 721 records [1] "CFKBDS2303-20251219-000612Z-DataLog_User_Sensors.dat" Read 721 records [1] "CFKBDS2303-20251219-010617Z-DataLog_User_Sensors.dat" Read 721 records [1] "CFKBDS2303-20251219-020622Z-DataLog_User_Sensors.dat" Read 721 records [1] "CFKBDS2303-20251219-030627Z-DataLog_User_Sensors.dat" Read 540 records [1] "Converting time stamp" [1] "Reading in interpolated AMPS data" [1] "Reading in interpolated MERRA-2 data" [1] "Reading int file: 251218a.int" [1] "Writing processed int output file: 251218a.int_out" [1] "Removing any manually screened data" [1] "Removed all data from 2 rows, keeping only period: 2025-12-18 19:26:04 to 2025-12-19 03:51:20" [1] "Comparing to GPS time" [1] "Missing GPS time, N = 1" [1] "Median time offset (Picarro - GPS) = 11.83 seconds" [1] "Range:" [1] 11.43 13.65 [1] "Removed ch4dry data from 24 rows, from screench4dry period: 2025-12-19 01:09:44 to 2025-12-19 01:10:00" [1] "Setting nonlocalfilt" [1] "Flagged all data from 41339 rows: 2025-12-19 00:05:23 to 2025-12-19 00:58:20 for onIce influence" [1] "Applying inlet lag" [1] 135.7344 [1] "Median tlag offset from predicted:" [1] 0.1332525 [1] "at high alt:" [1] 0.1769702 [1] 281.6021 [1] "at low alt:" [1] -0.2834044 [1] 758.8635 [1] "Range of tlag:" [1] 21.45089 58.92377 0% 25% 50% 75% 100% 21.45089 26.78049 29.87523 52.75076 58.92377 [1] "Applying cavity pressure and ambient pressure corrections" [1] "Cavity pressure correction applied (co2, ch4, co, h2o coeffs):" [1] 0.47 8.10 0.00 0.00 [1] "Cabin pressure correction applied (co2, ch4, co, h2o coeffs):" [1] 0 0 0 0 [1] "Finding cal and sample periods" [1] "Plotting specified intervals" startchar endchar startdt 1 2025-12-18 19:26:04 2025-12-19 03:51:20 2025-12-18 19:26:04 enddt flag label 1 2025-12-19 03:51:20 all all [1] "Plotting all variables for period:" startchar endchar startdt 1 2025-12-18 19:26:04 2025-12-19 03:51:20 2025-12-18 19:26:04 enddt flag label 1 2025-12-19 03:51:20 all all [1] "Plotting SDs of selected variables for period:" startchar endchar startdt 1 2025-12-18 19:26:04 2025-12-19 03:51:20 2025-12-18 19:26:04 enddt flag label 1 2025-12-19 03:51:20 all all [1] "Plotting Deltas of selected variables for period:" startchar endchar startdt 1 2025-12-18 19:26:04 2025-12-19 03:51:20 2025-12-18 19:26:04 enddt flag label 1 2025-12-19 03:51:20 all all [1] "co2dry_prescreen 0" [1] "ch4dry_prescreen 0" [1] "cmon_prescreen 0" [1] "h2o_prescreen 0" [1] "cavp 0.1" [1] "ambp 0.1" [1] "cavt 43.1" [1] "boxt 46.6" [1] "dast 69.7" [1] "etalont 48.1" [1] "flow1 2.8" [1] "inletvlv 0.1" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Plotting all variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Plotting SDs of selected variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Plotting Deltas of selected variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "co2dry_prescreen 0" [1] "ch4dry_prescreen 0" [1] "cmon_prescreen 0" [1] "h2o_prescreen 0" [1] "cavp 0.1" [1] "ambp 0.1" [1] "cavt 43.1" [1] "boxt 46.6" [1] "dast 69.7" [1] "etalont 48.1" [1] "flow1 2.8" [1] "inletvlv 0.1" [1] "Plotting timeseries of concentration variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Re-plotting nonlocal timeseries of concentration variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Plotting profiles of concentration variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Re-plotting non-local profiles of concentration variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Plotting inlet lag estimate" [1] "Plotting timeseries of interpolated AMPS variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight [1] "Plotting timeseries of interpolated MERRA-2 variables for period:" startchar endchar startdt 2 2025-12-18 21:08:59 2025-12-19 03:35:08 2025-12-18 21:08:59 enddt flag label 2 2025-12-19 03:35:08 flight flight startchar endchar startdt 3 2025-12-18 19:01:10 2025-12-18 19:46:10 2025-12-18 19:01:10 enddt flag label 3 2025-12-18 19:46:10 warmup warmup [1] "Plotting warmup variables for period:" startchar endchar startdt 3 2025-12-18 19:01:10 2025-12-18 19:46:10 2025-12-18 19:01:10 enddt flag label 3 2025-12-18 19:46:10 warmup warmup startchar endchar startdt 4 2025-12-19 00:05:23 2025-12-19 00:58:20 2025-12-19 00:05:23 enddt flag label 4 2025-12-19 00:58:20 local onIce startchar endchar startdt 5 2025-12-18 21:08:59 2025-12-18 22:06:11 2025-12-18 21:08:59 enddt flag label 5 2025-12-18 22:06:11 prof MCMdep [1] "Plotting profiles of concentration variables for period:" startchar endchar startdt 5 2025-12-18 21:08:59 2025-12-18 22:06:11 2025-12-18 21:08:59 enddt flag label 5 2025-12-18 22:06:11 prof MCMdep startchar endchar startdt 6 2025-12-18 21:08:59 2025-12-18 22:06:11 2025-12-18 21:08:59 enddt flag label 6 2025-12-18 22:06:11 tser MCMdep [1] "Plotting timeseries of concentration variables for period:" startchar endchar startdt 6 2025-12-18 21:08:59 2025-12-18 22:06:11 2025-12-18 21:08:59 enddt flag label 6 2025-12-18 22:06:11 tser MCMdep startchar endchar startdt 7 2025-12-18 23:31:18 2025-12-19 00:05:23 2025-12-18 23:31:18 enddt flag label 7 2025-12-19 00:05:23 prof SPOarr [1] "Plotting profiles of concentration variables for period:" startchar endchar startdt 7 2025-12-18 23:31:18 2025-12-19 00:05:23 2025-12-18 23:31:18 enddt flag label 7 2025-12-19 00:05:23 prof SPOarr startchar endchar startdt 8 2025-12-18 23:31:18 2025-12-19 00:05:23 2025-12-18 23:31:18 enddt flag label 8 2025-12-19 00:05:23 tser SPOarr [1] "Plotting timeseries of concentration variables for period:" startchar endchar startdt 8 2025-12-18 23:31:18 2025-12-19 00:05:23 2025-12-18 23:31:18 enddt flag label 8 2025-12-19 00:05:23 tser SPOarr startchar endchar startdt 9 2025-12-19 00:57:34 2025-12-19 01:27:37 2025-12-19 00:57:34 enddt flag label 9 2025-12-19 01:27:37 prof SPOdep [1] "Plotting profiles of concentration variables for period:" startchar endchar startdt 9 2025-12-19 00:57:34 2025-12-19 01:27:37 2025-12-19 00:57:34 enddt flag label 9 2025-12-19 01:27:37 prof SPOdep [1] "Re-plotting non-local profiles of concentration variables for period:" startchar endchar startdt 9 2025-12-19 00:57:34 2025-12-19 01:27:37 2025-12-19 00:57:34 enddt flag label 9 2025-12-19 01:27:37 prof SPOdep startchar endchar startdt 10 2025-12-19 00:57:34 2025-12-19 01:27:37 2025-12-19 00:57:34 enddt flag label 10 2025-12-19 01:27:37 tser SPOdep [1] "Plotting timeseries of concentration variables for period:" startchar endchar startdt 10 2025-12-19 00:57:34 2025-12-19 01:27:37 2025-12-19 00:57:34 enddt flag label 10 2025-12-19 01:27:37 tser SPOdep [1] "Re-plotting nonlocal timeseries of concentration variables for period:" startchar endchar startdt 10 2025-12-19 00:57:34 2025-12-19 01:27:37 2025-12-19 00:57:34 enddt flag label 10 2025-12-19 01:27:37 tser SPOdep startchar endchar startdt 11 2025-12-19 02:58:54 2025-12-19 03:35:08 2025-12-19 02:58:54 enddt flag label 11 2025-12-19 03:35:08 prof MCMarr [1] "Plotting profiles of concentration variables for period:" startchar endchar startdt 11 2025-12-19 02:58:54 2025-12-19 03:35:08 2025-12-19 02:58:54 enddt flag label 11 2025-12-19 03:35:08 prof MCMarr startchar endchar startdt 12 2025-12-19 02:58:54 2025-12-19 03:35:08 2025-12-19 02:58:54 enddt flag label 12 2025-12-19 03:35:08 tser MCMarr [1] "Plotting timeseries of concentration variables for period:" startchar endchar startdt 12 2025-12-19 02:58:54 2025-12-19 03:35:08 2025-12-19 02:58:54 enddt flag label 12 2025-12-19 03:35:08 tser MCMarr startchar endchar startdt 13 2025-12-19 01:09:44 2025-12-19 01:10:00 2025-12-19 01:09:44 enddt flag label 13 2025-12-19 01:10:00 screench4dry startchar endchar startdt 14 2025-12-18 21:08:59 2025-12-18 21:15:00 2025-12-18 21:08:59 enddt flag label 14 2025-12-18 21:15:00 ch4plume [1] "Reading in monthly AWS file: 10min-cbd202512q10.txt" Read 11 items Read 6 items [1] "Reading in monthly AWS file: 10min-lda202512q10.txt" Read 10 items Read 6 items [1] "Reading in monthly AWS file: 10min-lor202512q10.txt" Read 10 items Read 6 items [1] "Reading in monthly AWS file: 10min-mnb202512q10.txt" Read 11 items Read 6 items [1] "Reading in monthly AWS file: 10min-mp2202512q10.txt" Read 12 items Read 6 items [1] "Reading in monthly AWS file: 10min-mpt202512q10.txt" Read 11 items Read 6 items [1] "Reading in monthly AWS file: 10min-phx202512q10.txt" Read 10 items Read 6 items [1] "Reading in monthly AWS file: 10min-wdb202512q10.txt" Read 11 items Read 6 items [1] "Reading in monthly AWS file: 10min-wfd202512q10.txt" Read 11 items Read 6 items [1] "Reading in monthly AWS file: 10min-wti202512q10.txt" Read 11 items Read 6 items [1] "Reading in Raw file: ElijahTallTower_01_2026.dat" [1] "Reading in Raw file: ElijahTallTower_02_2026.dat" [1] "Reading in Raw file: ElijahTallTower_11_2025.dat" [1] "Reading in Raw file: ElijahTallTower_12_2025.dat" [1] "Reading in Raw file: Linda_01_2026.dat" [1] "Reading in Raw file: Linda_02_2026.dat" [1] "Reading in Raw file: Lorne_01_2026.dat" [1] "Reading in Raw file: Lorne_02_2026.dat" [1] "Reading in Raw file: MarblePointII_01_2026.dat" [1] "Reading in Raw file: MarblePointII_02_2026.dat" [1] "Reading in Raw file: MinnaBluff_01_2026.dat" [1] "Reading in Raw file: MinnaBluff_02_2026.dat" [1] "Reading in Raw file: Phoenix_01_2026.dat" [1] "Reading in Raw file: Phoenix_02_2026.dat" [1] "Reading in Raw file: Sarah.20251121.txt" [1] "Reading in Raw file: Sarah.20251122.txt" [1] "Reading in Raw file: Sarah.20251127.txt" [1] "Reading in Raw file: Sarah.20251128.txt" [1] "Reading in Raw file: Sarah.20251130.txt" [1] "Reading in Raw file: Sarah.20251201.txt" [1] "Reading in Raw file: Sarah.20251203.txt" [1] "Reading in Raw file: Sarah.20251209.txt" [1] "Reading in Raw file: Sarah.20251210.txt" [1] "Reading in Raw file: Sarah.20251211.txt" [1] "Reading in Raw file: Sarah.20251212.txt" [1] "Reading in Raw file: Sarah.20251214.txt" [1] "Reading in Raw file: Sarah.20251215.txt" [1] "Reading in Raw file: Sarah.20251218.txt" [1] "Reading in Raw file: Sarah.20251219.txt" [1] "Reading in Raw file: Sarah.20251222.txt" [1] "Reading in Raw file: Sarah.20251223.txt" [1] "Reading in Raw file: Sarah.20251228.txt" [1] "Reading in Raw file: Sarah.20260108.txt" [1] "Reading in Raw file: Sarah.20260113.txt" [1] "Reading in Raw file: Sarah.20260116.txt" [1] "Reading in Raw file: Sarah.20260120.txt" [1] "Reading in Raw file: Sarah.20260203.txt" [1] "Reading in Raw file: WhiteIsland_01_2026.dat" [1] "Reading in Raw file: WhiteIsland_02_2026.dat" [1] "Reading in Raw file: WindlessBight_01_2026.dat" [1] "Reading in Raw file: WindlessBight_02_2026.dat" [1] "Reading in 3 ESNZ files" [1] -3.1825301 -2.1406516 2.4256759 0.3985719 0.6307756 -1.0157562 [7] -0.6226865 0.4670464 -2.4865685 0.0000000 3.0968513 -2.6824342 [1] -1.7232177 -2.0987645 -1.9858600 -1.5550971 -1.0644683 -0.6224835 [7] -0.5491580 -0.5088132 -3.0146649 -1.6620000 -3.4388192 -2.0930651 [1] 3.6191128 2.9978662 3.1348914 1.6053618 1.2373240 1.1913213 0.8302487 [8] 0.6906686 3.9078418 1.6620000 4.6277387 3.4024071 [1] 61.56616 45.56609 309.30661 345.62452 329.35015 58.49888 48.59037 [8] 317.45076 39.51664 0.00000 317.99517 52.03559 [1] "LDA" "LOR" "MNB" "MP2" [5] "MPT" "PHX" "WDB" "WTI" [9] "ElijahTallTower" "Sarah" "Arrival Heights" "Scott Base 2" startchar endchar startdt 15 2025-12-18 21:08:59 2025-12-18 21:15:00 2025-12-18 21:08:59 enddt flag label 15 2025-12-18 21:15:00 tser ch4plume [1] "Plotting timeseries of concentration variables for period:" startchar endchar startdt 15 2025-12-18 21:08:59 2025-12-18 21:15:00 2025-12-18 21:08:59 enddt flag label 15 2025-12-18 21:15:00 tser ch4plume startchar endchar startdt 16 2025-12-18 20:56:00 2025-12-18 20:56:30 2025-12-18 20:56:00 enddt flag label 16 2025-12-18 20:56:30 lkchk Rack [1] "Plotting concentration variables for leak check period:" startchar endchar startdt 16 2025-12-18 20:56:00 2025-12-18 20:56:30 2025-12-18 20:56:00 enddt flag label 16 2025-12-18 20:56:30 lkchk Rack startchar endchar startdt 17 2025-12-18 21:04:01 2025-12-18 21:04:31 2025-12-18 21:04:01 enddt flag label 17 2025-12-18 21:04:31 lkchk Picarro [1] "Plotting concentration variables for leak check period:" startchar endchar startdt 17 2025-12-18 21:04:01 2025-12-18 21:04:31 2025-12-18 21:04:01 enddt flag label 17 2025-12-18 21:04:31 lkchk Picarro startchar endchar startdt 18 2025-12-19 02:20:05 2025-12-19 02:31:50 2025-12-19 02:20:05 enddt flag label 18 2025-12-19 02:31:50 man diagnostics [1] "Plotting all variables for period:" startchar endchar startdt 18 2025-12-19 02:20:05 2025-12-19 02:31:50 2025-12-19 02:20:05 enddt flag label 18 2025-12-19 02:31:50 man diagnostics [1] "Plotting SDs of selected variables for period:" startchar endchar startdt 18 2025-12-19 02:20:05 2025-12-19 02:31:50 2025-12-19 02:20:05 enddt flag label 18 2025-12-19 02:31:50 man diagnostics [1] "Plotting Deltas of selected variables for period:" startchar endchar startdt 18 2025-12-19 02:20:05 2025-12-19 02:31:50 2025-12-19 02:20:05 enddt flag label 18 2025-12-19 02:31:50 man diagnostics [1] "co2dry_prescreen 0" [1] "ch4dry_prescreen 0" [1] "cmon_prescreen 0" [1] "h2o_prescreen 0" [1] "cavp 0.1" [1] "ambp 0.1" [1] "cavt 43.1" [1] "boxt 46.6" [1] "dast 69.7" [1] "etalont 48.1" [1] "flow1 2.8" [1] "inletvlv 0.1" [1] "251218a_all_all_1.png" [2] "251218a_all_all_2.png" [3] "251218a_all_SDs.png" [4] "251218a_all_Deltas.png" [5] "251218a_flight_flight_1.png" [6] "251218a_flight_flight_2.png" [7] "251218a_flight_SDs.png" [8] "251218a_flight_Deltas.png" [9] "251218a_flight_timeseries.png" [10] "251218a_flight_timeseries_nonlocal.png" [11] "251218a_flight_profile.png" [12] "251218a_flight_profile_nonlocal.png" [13] "251218a_flight_AMPS_timeseries.png" [14] "251218a_flight_MERRA2_timeseries.png" [15] "251218a_MCMdep_profile.png" [16] "251218a_MCMdep_timeseries.png" [17] "251218a_SPOarr_profile.png" [18] "251218a_SPOarr_timeseries.png" [19] "251218a_SPOdep_profile.png" [20] "251218a_SPOdep_profile_nonlocal.png" [21] "251218a_SPOdep_timeseries.png" [22] "251218a_SPOdep_timeseries_nonlocal.png" [23] "251218a_MCMarr_profile.png" [24] "251218a_MCMarr_timeseries.png" [25] "251218a_map_ch4plume.png" [26] "251218a_ch4plume_timeseries.png" [27] "251218a_Rack_lkchk.png" [28] "251218a_Picarro_lkchk.png" [29] "251218a_diagnostics_man_1.png" [30] "251218a_diagnostics_man_2.png" [31] "251218a_diagnostics_SDs.png" [32] "251218a_diagnostics_Deltas.png" [1] "Making flight html" [1] "Making index html" [1] "Outputting data files" Warning messages: 1: In regularize.values(x, y, ties, missing(ties), na.rm = na.rm) : collapsing to unique 'x' values 2: In regularize.values(x, y, ties, missing(ties), na.rm = na.rm) : collapsing to unique 'x' values