[1] "Sun Dec 21 00:28:40 2025"
[1] "Analyzing  221129a"
[1] "Reading in raw Picarro user data files"
[1] "CFKBDS2303-20221129-013947Z-DataLog_User.dat"
Read 5312 records
[1] "CFKBDS2303-20221129-190942Z-DataLog_User.dat"
Read 5421 records
[1] "CFKBDS2303-20221129-200947Z-DataLog_User.dat"
Read 5439 records
[1] "CFKBDS2303-20221129-210952Z-DataLog_User.dat"
Read 5435 records
[1] "CFKBDS2303-20221129-220958Z-DataLog_User.dat"
Read 5385 records
[1] "CFKBDS2303-20221129-231003Z-DataLog_User.dat"
Read 5426 records
[1] "CFKBDS2303-20221130-001009Z-DataLog_User.dat"
Read 5497 records
[1] "CFKBDS2303-20221130-011014Z-DataLog_User.dat"
Read 5478 records
[1] "CFKBDS2303-20221130-021019Z-DataLog_User.dat"
Read 5390 records
[1] "CFKBDS2303-20221130-031024Z-DataLog_User.dat"
Read 5335 records
[1] "CFKBDS2303-20221130-041029Z-DataLog_User.dat"
Read 1845 records
[1] "Converting time stamp"
[1] "Median sample interval = 2.65 secs"
[1] "Median CO2 sample interval = 0.25 seconds"
[1] "Median CH4 sample interval = 0.46 seconds"
[1] "Median CO sample interval = 1.07 seconds"
[1] "Median H2O sample interval = 0.87 seconds"
[1] "Reading in raw Picarro sensor data files"
[1] "CFKBDS2303-20221129-011040Z-DataLog_User_Sensors.dat"
Read 1070 records
[1] "CFKBDS2303-20221129-021047Z-DataLog_User_Sensors.dat"
Read 326 records
[1] "CFKBDS2303-20221129-183510Z-DataLog_User_Sensors.dat"
Read 1135 records
[1] "CFKBDS2303-20221129-193517Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221129-203522Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221129-213527Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221129-223532Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221129-233537Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221130-003542Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221130-013547Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221130-023552Z-DataLog_User_Sensors.dat"
Read 721 records
[1] "CFKBDS2303-20221130-033557Z-DataLog_User_Sensors.dat"
Read 660 records
[1] "Converting time stamp"
[1] "Reading int file: 221129a.int"
[1] 1
[1] 2
[1] 3
[1] 4
[1] 5
[1] 6
[1] 7
[1] 8
[1] 9
[1] 10
[1] 11
[1] 12
[1] 13
[1] 14
[1] 15
[1] 16
[1] 17
[1] 18
[1] 19
[1] 20
[1] 21
[1] 22
[1] 23
[1] "x"
[1] "Writing processed int output file: 221129a.int_out"
[1] "Removing any manually screened data"
[1] "Removed all data from 5313 rows, keeping only period: 2022-11-29 18:35:00 to 2022-11-30 04:30:49"
[1] "Comparing to GPS time"
[1] "Median time offset (Picarro - GPS) = -1.36 seconds"
[1] "Range:"
[1] -23093.27     -0.60
[1] "Removed all conc data from 139 rows, from screenallconc period: 2022-11-30 04:08:20 to 2022-11-30 04:10:06"
[1] "Setting nonlocalfilt"
[1] "Flagged all data from 49176 rows: 2022-11-29 21:01:52 to 2022-11-29 21:18:07 for pollution influence"
[1] "Flagged all data from 50567 rows: 2022-11-30 00:04:27 to 2022-11-30 00:05:22 for pollution influence"
[1] "Flagged all data from 50397 rows: 2022-11-30 00:08:56 to 2022-11-30 00:11:43 for pollution influence"
[1] "Flagged all data from 45540 rows: 2022-11-30 00:41:28 to 2022-11-30 01:37:11 for pollution influence"
[1] "Flagged all data from 50609 rows: 2022-11-30 02:45:46 to 2022-11-30 02:46:13 for pollution influence"
[1] "Flagged all data from 50518 rows: 2022-11-30 04:22:15 to 2022-11-30 04:23:42 for pollution influence"
[1] "Applying inlet lag"
[1] 154.7258
[1] "Median tlag offset from predicted:"
[1] 0.1723732
[1] "at high alt:"
[1] 0.2914344
[1] 243.4091
[1] "at low alt:"
[1] -0.2203142
[1] 758.696
[1] "Range of tlag:"
[1] 18.60341 51.64834
      0%      25%      50%      75%     100% 
18.60341 21.16075 28.26657 49.02050 51.64834 
[1] "Applying cavity pressure and ambient pressure corrections"
[1] "Cavity pressure correction applied (co2, ch4, co, h2o coeffs):"
[1] 0.47 8.10 0.00 0.00
[1] "Cabin pressure correction applied (co2, ch4, co, h2o coeffs):"
[1] 0 0 0 0
[1] "Finding cal and sample periods"
[1] "Plotting specified intervals"
            startchar             endchar             startdt
1 2022-11-29 18:35:00 2022-11-30 04:30:49 2022-11-29 18:35:00
                enddt flag       label
1 2022-11-30 04:30:49  all diagnostics
[1] "Plotting all variables for period:"
            startchar             endchar             startdt
1 2022-11-29 18:35:00 2022-11-30 04:30:49 2022-11-29 18:35:00
                enddt flag       label
1 2022-11-30 04:30:49  all diagnostics
            startchar             endchar             startdt
2 2022-11-29 21:17:05 2022-11-30 04:22:31 2022-11-29 21:17:05
                enddt   flag       label
2 2022-11-30 04:22:31 flight diagnostics
[1] "Plotting all variables for period:"
            startchar             endchar             startdt
2 2022-11-29 21:17:05 2022-11-30 04:22:31 2022-11-29 21:17:05
                enddt   flag       label
2 2022-11-30 04:22:31 flight diagnostics
[1] "Plotting timeseries of concentration variables for period:"
            startchar             endchar             startdt
2 2022-11-29 21:17:05 2022-11-30 04:22:31 2022-11-29 21:17:05
                enddt   flag       label
2 2022-11-30 04:22:31 flight diagnostics
[1] "Re-plotting nonlocal timeseries of concentration variables for period:"
            startchar             endchar             startdt
2 2022-11-29 21:17:05 2022-11-30 04:22:31 2022-11-29 21:17:05
                enddt   flag       label
2 2022-11-30 04:22:31 flight diagnostics
[1] "Plotting profiles of concentration variables for period:"
            startchar             endchar             startdt
2 2022-11-29 21:17:05 2022-11-30 04:22:31 2022-11-29 21:17:05
                enddt   flag       label
2 2022-11-30 04:22:31 flight diagnostics
[1] "Re-plotting non-local profiles of concentration variables for period:"
            startchar             endchar             startdt
2 2022-11-29 21:17:05 2022-11-30 04:22:31 2022-11-29 21:17:05
                enddt   flag       label
2 2022-11-30 04:22:31 flight diagnostics
[1] "Plotting inlet lag estimate"
            startchar             endchar             startdt
3 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                enddt flag  label
3 2022-11-29 22:15:00 prof MCMdep
[1] "Plotting profiles of concentration variables for period:"
            startchar             endchar             startdt
3 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                enddt flag  label
3 2022-11-29 22:15:00 prof MCMdep
[1] "Re-plotting non-local profiles of concentration variables for period:"
            startchar             endchar             startdt
3 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                enddt flag  label
3 2022-11-29 22:15:00 prof MCMdep
            startchar             endchar             startdt
4 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                enddt flag  label
4 2022-11-29 22:15:00 tser MCMdep
[1] "Plotting timeseries of concentration variables for period:"
            startchar             endchar             startdt
4 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                enddt flag  label
4 2022-11-29 22:15:00 tser MCMdep
[1] "Re-plotting nonlocal timeseries of concentration variables for period:"
            startchar             endchar             startdt
4 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                enddt flag  label
4 2022-11-29 22:15:00 tser MCMdep
            startchar             endchar             startdt
5 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                enddt flag  label
5 2022-11-30 00:05:00 prof SPOarr
[1] "Plotting profiles of concentration variables for period:"
            startchar             endchar             startdt
5 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                enddt flag  label
5 2022-11-30 00:05:00 prof SPOarr
[1] "Re-plotting non-local profiles of concentration variables for period:"
            startchar             endchar             startdt
5 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                enddt flag  label
5 2022-11-30 00:05:00 prof SPOarr
            startchar             endchar             startdt
6 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                enddt flag  label
6 2022-11-30 00:05:00 tser SPOarr
[1] "Plotting timeseries of concentration variables for period:"
            startchar             endchar             startdt
6 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                enddt flag  label
6 2022-11-30 00:05:00 tser SPOarr
[1] "Re-plotting nonlocal timeseries of concentration variables for period:"
            startchar             endchar             startdt
6 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                enddt flag  label
6 2022-11-30 00:05:00 tser SPOarr
            startchar             endchar             startdt
7 2022-11-30 01:38:00 2022-11-30 02:25:00 2022-11-30 01:38:00
                enddt flag  label
7 2022-11-30 02:25:00 prof SPOdep
[1] "Plotting profiles of concentration variables for period:"
            startchar             endchar             startdt
7 2022-11-30 01:38:00 2022-11-30 02:25:00 2022-11-30 01:38:00
                enddt flag  label
7 2022-11-30 02:25:00 prof SPOdep
            startchar             endchar             startdt
8 2022-11-30 01:38:00 2022-11-30 02:25:00 2022-11-30 01:38:00
                enddt flag  label
8 2022-11-30 02:25:00 tser SPOdep
[1] "Plotting timeseries of concentration variables for period:"
            startchar             endchar             startdt
8 2022-11-30 01:38:00 2022-11-30 02:25:00 2022-11-30 01:38:00
                enddt flag  label
8 2022-11-30 02:25:00 tser SPOdep
            startchar             endchar             startdt
9 2022-11-30 04:08:21 2022-11-30 04:22:31 2022-11-30 04:08:21
                enddt flag  label
9 2022-11-30 04:22:31 prof MCMarr
[1] "Plotting profiles of concentration variables for period:"
            startchar             endchar             startdt
9 2022-11-30 04:08:21 2022-11-30 04:22:31 2022-11-30 04:08:21
                enddt flag  label
9 2022-11-30 04:22:31 prof MCMarr
[1] "Re-plotting non-local profiles of concentration variables for period:"
            startchar             endchar             startdt
9 2022-11-30 04:08:21 2022-11-30 04:22:31 2022-11-30 04:08:21
                enddt flag  label
9 2022-11-30 04:22:31 prof MCMarr
             startchar             endchar             startdt
10 2022-11-30 03:55:00 2022-11-30 04:15:00 2022-11-30 03:55:00
                 enddt flag  label
10 2022-11-30 04:15:00 tser MCMarr
[1] "Plotting timeseries of concentration variables for period:"
             startchar             endchar             startdt
10 2022-11-30 03:55:00 2022-11-30 04:15:00 2022-11-30 03:55:00
                 enddt flag  label
10 2022-11-30 04:15:00 tser MCMarr
             startchar             endchar             startdt
11 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                 enddt      flag  label
11 2022-11-29 22:15:00 cavp_prof MCMdep
[1] "Plotting cavity pressure, ground speed, flow, and co2 profiles for period:"
             startchar             endchar             startdt
11 2022-11-29 21:17:05 2022-11-29 22:15:00 2022-11-29 21:17:05
                 enddt      flag  label
11 2022-11-29 22:15:00 cavp_prof MCMdep
             startchar             endchar             startdt
12 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                 enddt      flag  label
12 2022-11-30 00:05:00 cavp_prof SPOarr
[1] "Plotting cavity pressure, ground speed, flow, and co2 profiles for period:"
             startchar             endchar             startdt
12 2022-11-29 23:42:00 2022-11-30 00:05:00 2022-11-29 23:42:00
                 enddt      flag  label
12 2022-11-30 00:05:00 cavp_prof SPOarr
             startchar             endchar             startdt
13 2022-11-30 01:38:00 2022-11-30 02:25:00 2022-11-30 01:38:00
                 enddt      flag  label
13 2022-11-30 02:25:00 cavp_prof SPOdep
[1] "Plotting cavity pressure, ground speed, flow, and co2 profiles for period:"
             startchar             endchar             startdt
13 2022-11-30 01:38:00 2022-11-30 02:25:00 2022-11-30 01:38:00
                 enddt      flag  label
13 2022-11-30 02:25:00 cavp_prof SPOdep
             startchar             endchar             startdt
14 2022-11-30 04:08:21 2022-11-30 04:22:31 2022-11-30 04:08:21
                 enddt      flag  label
14 2022-11-30 04:22:31 cavp_prof MCMarr
[1] "Plotting cavity pressure, ground speed, flow, and co2 profiles for period:"
             startchar             endchar             startdt
14 2022-11-30 04:08:21 2022-11-30 04:22:31 2022-11-30 04:08:21
                 enddt      flag  label
14 2022-11-30 04:22:31 cavp_prof MCMarr
             startchar             endchar             startdt
15 2022-11-30 01:55:00 2022-11-30 02:25:00 2022-11-30 01:55:00
                 enddt      flag  label
15 2022-11-30 02:25:00 cavp_vgas SPOdep
[1] "Plotting gases vs cavity pressure:"
             startchar             endchar             startdt
15 2022-11-30 01:55:00 2022-11-30 02:25:00 2022-11-30 01:55:00
                 enddt      flag  label
15 2022-11-30 02:25:00 cavp_vgas SPOdep
             startchar             endchar             startdt
16 2022-11-30 03:55:00 2022-11-30 04:15:00 2022-11-30 03:55:00
                 enddt      flag  label
16 2022-11-30 04:15:00 cavp_vgas MCMarr
[1] "Plotting gases vs cavity pressure:"
             startchar             endchar             startdt
16 2022-11-30 03:55:00 2022-11-30 04:15:00 2022-11-30 03:55:00
                 enddt      flag  label
16 2022-11-30 04:15:00 cavp_vgas MCMarr
             startchar             endchar             startdt
17 2022-11-29 21:01:52 2022-11-29 21:18:07 2022-11-29 21:01:52
                 enddt  flag     label
17 2022-11-29 21:18:07 local pollution
             startchar             endchar             startdt
18 2022-11-30 00:04:27 2022-11-30 00:05:22 2022-11-30 00:04:27
                 enddt  flag     label
18 2022-11-30 00:05:22 local pollution
             startchar             endchar             startdt
19 2022-11-30 00:08:56 2022-11-30 00:11:43 2022-11-30 00:08:56
                 enddt  flag     label
19 2022-11-30 00:11:43 local pollution
             startchar             endchar             startdt
20 2022-11-30 00:41:28 2022-11-30 01:37:11 2022-11-30 00:41:28
                 enddt  flag     label
20 2022-11-30 01:37:11 local pollution
             startchar             endchar             startdt
21 2022-11-30 02:45:46 2022-11-30 02:46:13 2022-11-30 02:45:46
                 enddt  flag     label
21 2022-11-30 02:46:13 local pollution
             startchar             endchar             startdt
22 2022-11-30 04:22:15 2022-11-30 04:23:42 2022-11-30 04:22:15
                 enddt  flag     label
22 2022-11-30 04:23:42 local pollution
             startchar             endchar             startdt
23 2022-11-30 04:08:20 2022-11-30 04:10:06 2022-11-30 04:08:20
                 enddt          flag label
23 2022-11-30 04:10:06 screenallconc      
 [1] "221129a_diagnostics_all_1.png"         
 [2] "221129a_diagnostics_all_2.png"         
 [3] "221129a_diagnostics_flight_1.png"      
 [4] "221129a_diagnostics_flight_2.png"      
 [5] "221129a_flight_timeseries.png"         
 [6] "221129a_flight_timeseries_nonlocal.png"
 [7] "221129a_flight_profile.png"            
 [8] "221129a_flight_profile_nonlocal.png"   
 [9] "221129a_MCMdep_profile.png"            
[10] "221129a_MCMdep_profile_nonlocal.png"   
[11] "221129a_MCMdep_timeseries.png"         
[12] "221129a_MCMdep_timeseries_nonlocal.png"
[13] "221129a_SPOarr_profile.png"            
[14] "221129a_SPOarr_profile_nonlocal.png"   
[15] "221129a_SPOarr_timeseries.png"         
[16] "221129a_SPOarr_timeseries_nonlocal.png"
[17] "221129a_SPOdep_profile.png"            
[18] "221129a_SPOdep_timeseries.png"         
[19] "221129a_MCMarr_profile.png"            
[20] "221129a_MCMarr_profile_nonlocal.png"   
[21] "221129a_MCMarr_timeseries.png"         
[22] "221129a_MCMdep_cavp_prof.png"          
[23] "221129a_SPOarr_cavp_prof.png"          
[24] "221129a_SPOdep_cavp_prof.png"          
[25] "221129a_MCMarr_cavp_prof.png"          
[26] "221129a_SPOdep_cavp_vgas.png"          
[27] "221129a_MCMarr_cavp_vgas.png"          
[1] "Making flight html"
[1] "Making index html"
[1] "Outputting data files"