[1] "2017-11-28 23:10:18 MST" [1] "1711" "171128" "d332" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2017-11-28 23:10:18 MST" [1] "o2scaleopt = wt, ave o2scale1 = 1.095, ave o2scale2 = 0.963" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2017-11-28 23:10:18 MST" [1] "Plotting 1-minute data" [1] "2017-11-28 23:10:18 MST" [1] "reading in medium-rate plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1043 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2017-11-28 23:10:20 MST" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 428 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.67 O2 = -502.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 404.14 O2 = -661.5" [1] "position 3 cylinder CC339490 description: LS CO2 = 408.84 O2 = -707.8" [1] "position 4 cylinder CA07671 description: LT CO2 = 393.12 O2 = -532.4" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.376 co2off = 831.87 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.18 minutes" [1] "Longest Cal: 8.27 minutes" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 253 261 0.1849433 0.1906366 0.1885015 3 -317.6787 369.2842 3 4 262 270 0.1913495 0.1970521 0.1949135 3 -308.5943 201.4459 5 3 280 288 0.2041875 0.2099329 0.2092164 3 -312.0074 246.4747 7 4 534 542 0.3931759 0.3988588 0.3967272 2 -307.3142 200.3808 8 2 543 551 0.3995694 0.4052512 0.4031204 2 -316.2391 363.8891 10 2 813 821 0.6014560 0.6071400 0.6050081 3 -315.4349 361.1896 11 4 822 830 0.6078507 0.6135336 0.6114024 3 -306.3469 202.2801 12 3 831 839 0.6142442 0.6199259 0.6192160 3 -309.8059 244.1500 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9088591 1.035452 0.0164336611 1.92686710 0.037091505 5.550448 3 0.9090632 1.035649 0.0096286636 -0.10576859 0.021605569 4.007725 5 0.9094366 1.036220 0.0069124785 11.15796695 0.018043268 11.649903 7 0.9140416 1.039892 0.0140774149 -0.61122971 0.031204968 4.213795 8 0.9143758 1.040263 -0.0003141665 1.72144047 0.003960369 4.481227 10 0.9173353 1.041216 0.0022510470 -0.03656703 0.005727960 5.303241 11 0.9176331 1.041364 0.0045024487 -0.91389623 0.011353099 3.837157 12 0.9177440 1.041562 0.0053521595 1.10014322 0.012405356 1.220860 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 822.77 co2l1 = 1.347 co2l0 = 256.929" [1] "co2l0 = -172.47 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "78 out of 80 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 935 1-min values rejected as stack air" [1] "2 out of 935 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "making html"