[1] "2017-11-27 23:10:17 MST" [1] "1711" "171127" "d331" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2017-11-27 23:10:17 MST" [1] "o2scaleopt = wt, ave o2scale1 = 1.105, ave o2scale2 = 0.963" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "155 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2017-11-27 23:10:18 MST" [1] "Plotting 1-minute data" [1] "2017-11-27 23:10:18 MST" [1] "reading in medium-rate plot titles" [1] "Removed 155 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1249 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2017-11-27 23:10:20 MST" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 428 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.67 O2 = -502.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 404.14 O2 = -661.5" [1] "position 3 cylinder CC339490 description: LS CO2 = 408.84 O2 = -707.8" [1] "position 4 cylinder CA07671 description: LT CO2 = 393.12 O2 = -532.4" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.371 co2off = 832.85 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.76 minutes" [1] "Shortest Cal: 6.14 minutes" [1] "Longest Cal: 8.2 minutes" [1] "Removed 1 CO2 cals with SD > 0.5" [1] "Removed 1 CO2 cals with Slope > 0.5" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 201 209 0.1433044 0.1489861 0.1468552 2 -309.7555 213.0433 3 2 210 218 0.1496979 0.1553843 0.1532508 2 -318.7640 363.8098 5 4 462 467 0.3579456 0.3622118 0.3611458 2 -310.2975 200.5889 6 3 468 476 0.3643426 0.3700243 0.3693140 2 -313.7875 238.1125 8 4 665 669 0.5599051 0.5641713 0.5634603 2 -308.9321 192.9200 9 2 670 678 0.5663032 0.5719942 0.5698590 2 -318.0686 358.9981 12 2 930 938 0.7683067 0.7739988 0.7718662 3 -318.7378 360.7633 13 4 939 947 0.7747095 0.7804028 0.7782657 3 -309.7905 199.0419 14 3 948 956 0.7811157 0.7868079 0.7860957 3 -313.2872 246.9260 16 4 1218 1226 0.9766817 0.9823681 0.9802358 2 -309.9980 198.2210 17 2 1227 1235 0.9830799 0.9887674 0.9866343 2 -318.9482 371.0619 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9043670 1.043427 -4.452614e-03 -0.80800065 0.013081817 7.145973 3 0.9044292 1.043611 -5.862553e-03 -1.33356890 0.013366180 10.786495 5 0.9036155 1.041953 2.957319e-05 -1.46103593 0.004962774 1.950727 6 0.9035149 1.041891 -8.782379e-03 -0.98268519 0.021176835 4.099478 8 0.9073185 1.036961 3.176224e-03 1.73390036 0.007134132 1.775803 9 0.9071533 1.036705 1.176837e-03 -2.35027504 0.003690803 9.768395 12 0.9055004 1.034119 -3.758685e-03 1.20315423 0.009598177 3.660806 13 0.9053145 1.033897 1.246551e-03 -0.06104895 0.004248599 2.717715 14 0.9051875 1.033624 -8.478873e-03 7.31556252 0.021230874 7.532392 16 0.9045440 1.032618 5.888600e-03 2.52918290 0.013199928 7.431757 17 0.9047316 1.032654 8.464082e-04 -3.62349316 0.005420694 13.468312 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 826.325 co2l1 = 1.348 co2l0 = -325.533" [1] "co2l0 = -172.49 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "49 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "1 out of 1097 1-min values rejected as stack air" [1] "1 out of 1097 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "making html"