[1] "2025-04-30 03:34:21 MDT"
[1] "1711"   "171126" "d330"  
[1] "No HR file found"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2025-04-30 03:34:21 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 1.131, ave o2scale2 = 0.973"
[1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000"
[1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000"
[1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2025-04-30 03:34:22 MDT"
[1] "Plotting 1-minute data"
[1] "2025-04-30 03:34:22 MDT"
[1] "reading in medium-rate plot titles"
[1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "TEMP: 1405 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-30 03:34:23 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4"
[1] "position 2 cylinder CB08905 description: MS CO2 = 404.34 O2 = -653.2"
[1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1"
[1] "position 4 cylinder CA07671 description: LT CO2 = 393.3 O2 = -526.1"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA"
[1] "Nominal linear calibrations:"
[1] "co2scl = 1.366  co2off = 838.99 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "Median Cal: 8.19 minutes"
[1] "Average Cal: 8.19 minutes"
[1] "Shortest Cal: 8.18 minutes"
[1] "Longest Cal: 8.2 minutes"
[1] "Removed 2 calibration row(s) with high SD"
[1] "Removed 1 anomalous calibration row(s)"
[1] "Plotting calibration sds and slopes"
[1] "cbind(calstart,calend)"
     calstart calend
[1,]        1      3
[2,]        4      5
[3,]        6      6
[1] "calperiods"
   type posi pose     timei     timee     timea grp    co2sig    o2sig
2     2  144  152 0.1024826 0.1081632 0.1060326   3 -326.0841 361.0627
3     4  153  161 0.1088738 0.1145648 0.1124339   3 -317.1674 201.3405
4     3  162  170 0.1152743 0.1209641 0.1202508   3 -320.6405 243.0425
6     4  436  444 0.3106910 0.3163715 0.3142412   2 -317.0903 196.2504
7     2  445  453 0.3170822 0.3227685 0.3206371   2 -325.9242 364.3842
20    3 1342 1350 0.9542963 0.9599745 0.9592643   1 -313.7554 237.6654
       jfcv1    jfcv2        co2slp      o2slp       co2sd     o2sd
2  0.8752635 1.019273  1.999687e-03  0.7884401 0.004797693 3.803016
3  0.8752183 1.019168 -1.292206e-03 -1.0155726 0.003478677 5.131971
4  0.8752238 1.019336 -7.754289e-05 -6.1633413 0.005401444 6.707910
6  0.8766129 1.020901  5.465895e-03 -0.3421954 0.012614004 9.852676
7  0.8767030 1.021018  5.728642e-03 -1.7281949 0.012866878 9.231592
20 0.9011250 1.042021  5.136087e-03 -1.1685218 0.011746200 1.194846
[1] "Plotting calibration fits"
[1] "Average calibration parameters:"
[1] "co2l0 = 841.612  co2l1 = 1.374 co2l0 = -230.089"
[1] "co2l0 = -169.13  co2l1 = 0.22"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "80 out of 430 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "350 out of 1213 1-min values rejected as stack air"
[1] "350 out of 1213 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "making html"