[1] "2025-04-30 03:34:15 MDT" [1] "1711" "171125" "d329" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:34:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.147, ave o2scale2 = 0.981" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:34:15 MDT" [1] "Plotting 1-minute data" [1] "2025-04-30 03:34:15 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1394 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:34:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 404.34 O2 = -653.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CA07671 description: LT CO2 = 393.3 O2 = -526.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.378 co2off = 847.14 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.19 minutes" [1] "Shortest Cal: 8.18 minutes" [1] "Longest Cal: 8.2 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 87 95 0.06123727 0.06691898 0.06478819 2 -319.2012 198.1954 3 2 96 104 0.06762847 0.07331134 0.07118138 2 -328.1524 361.2143 6 2 380 388 0.26945718 0.27513773 0.27300744 3 -328.0422 361.2815 7 4 389 397 0.27584722 0.28152894 0.27939831 3 -319.1012 197.8302 8 3 398 406 0.28223958 0.28791782 0.28720756 3 -322.5241 235.5574 10 4 673 681 0.47767477 0.48336458 0.48123264 2 -317.9339 206.1371 11 2 682 690 0.48407523 0.48976389 0.48762748 2 -326.8574 357.3725 13 2 953 961 0.68595255 0.69163657 0.68950463 3 -326.7717 362.8749 14 4 962 970 0.69234722 0.69803009 0.69589914 3 -317.8558 203.3416 16 3 980 988 0.70514236 0.71083102 0.71011767 3 -321.3548 233.0148 18 4 1246 1254 0.89423495 0.89992014 0.89778770 2 -317.6530 199.4525 19 2 1255 1263 0.90063079 0.90631366 0.90418287 2 -326.6086 359.7042 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.8687253 1.018318 -0.004329987 -0.1436833 0.010936097 7.387971 3 0.8687250 1.018457 -0.001904179 1.4125554 0.004629743 4.510960 6 0.8693385 1.018562 0.003545759 1.6444876 0.009107003 6.085348 7 0.8693642 1.018527 0.002653875 -0.4979937 0.008614080 4.707575 8 0.8694414 1.018699 0.004393592 1.6853888 0.011840709 1.780661 10 0.8731562 1.022126 0.002966496 0.4672944 0.007292772 6.555439 11 0.8732199 1.022368 -0.003225040 -0.3124381 0.008143066 5.334542 13 0.8731191 1.021972 -0.003847720 -1.3377956 0.009036632 7.221446 14 0.8730553 1.021657 0.004408029 0.8368038 0.009987939 3.373644 16 0.8729736 1.021247 -0.003397980 -8.8701034 0.008997023 9.189367 18 0.8734954 1.019010 0.005548517 2.5886142 0.012979494 6.858529 19 0.8733817 1.018931 -0.006669783 1.5542231 0.014984615 9.814580 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 842.87 co2l1 = 1.363 co2l0 = -282.769" [1] "co2l0 = -170.69 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "68 out of 405 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "337 out of 1216 1-min values rejected as stack air" [1] "337 out of 1216 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"