[1] "2025-04-30 03:34:08 MDT" [1] "1711" "171124" "d328" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:34:08 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.154, ave o2scale2 = 0.983" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "40 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:34:08 MDT" [1] "Plotting 1-minute data" [1] "2025-04-30 03:34:08 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 40 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1368 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:34:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 404.34 O2 = -653.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CA07671 description: LT CO2 = 393.3 O2 = -526.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.374 co2off = 847.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.04 minutes" [1] "Shortest Cal: 6.14 minutes" [1] "Longest Cal: 8.23 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 6 4 313 321 0.2285544 0.2342350 0.2321050 2 -319.9757 197.2681 7 2 322 326 0.2363657 0.2406296 0.2399194 2 -328.9474 377.6715 9 2 576 584 0.4367396 0.4424259 0.4402953 3 -329.3625 359.9643 10 4 585 593 0.4431366 0.4488183 0.4466863 3 -320.4514 201.5153 12 3 603 611 0.4559282 0.4616111 0.4609008 3 -323.9396 248.0624 14 4 869 877 0.6449063 0.6505961 0.6484606 2 -320.6534 204.6493 15 2 878 886 0.6513056 0.6569850 0.6548553 2 -329.5049 362.2524 17 2 1162 1170 0.8531019 0.8587847 0.8566520 3 -328.6838 362.0398 18 4 1171 1179 0.8594977 0.8651771 0.8630471 3 -319.7385 199.6567 19 3 1180 1188 0.8658877 0.8715752 0.8708654 3 -323.1579 249.3240 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 6 0.8657500 1.016227 -0.005300672 6.7839874 0.018171308 16.068652 7 0.8656783 1.016328 0.007943253 20.1420164 0.010357163 20.595216 9 0.8648946 1.015868 -0.003612700 -2.6730594 0.008388271 8.015690 10 0.8648629 1.015773 -0.002594333 1.0758756 0.008771233 6.862286 12 0.8648826 1.015692 -0.004825539 4.5228412 0.012263477 4.624688 14 0.8647240 1.016225 0.002873695 0.4890774 0.007238291 6.867845 15 0.8648294 1.016383 0.005292992 -2.0518277 0.011952037 9.863426 17 0.8672674 1.017777 0.002365249 -1.7931640 0.005803068 8.478907 18 0.8673269 1.017754 0.005230610 -0.6529935 0.011840457 6.780238 19 0.8673285 1.017992 0.003607975 6.9930761 0.008288690 7.463259 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 845.954 co2l1 = 1.364 co2l0 = -138.944" [1] "co2l0 = -170.54 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "95 out of 260 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "165 out of 1204 1-min values rejected as stack air" [1] "165 out of 1204 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"