[1] "2025-04-30 03:34:01 MDT" [1] "1711" "171123" "d327" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:34:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.135, ave o2scale2 = 0.967" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:34:01 MDT" [1] "Plotting 1-minute data" [1] "2025-04-30 03:34:01 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1388 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:34:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 404.34 O2 = -653.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CA07671 description: LT CO2 = 393.3 O2 = -526.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.372 co2off = 841.07 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 8.19 minutes" [1] "Shortest Cal: 8.18 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 60 68 0.0509397 0.05662279 0.05449116 2 -314.4252 196.8847 3 2 69 77 0.0573333 0.06301598 0.06088518 2 -323.3610 352.1706 5 2 350 358 0.2591837 0.26487115 0.26273888 3 -323.5898 365.5330 6 4 359 367 0.2655817 0.27126601 0.26913422 3 -314.5948 201.9054 8 3 377 385 0.2783712 0.28406829 0.28335811 3 -318.0563 211.8974 10 4 643 651 0.4674364 0.47313321 0.47099420 2 -315.1601 189.4302 11 2 652 660 0.4738437 0.47952836 0.47739707 2 -324.1323 362.1763 13 2 833 841 0.6041344 0.60982767 0.60768894 2 -324.5971 369.9694 14 4 842 850 0.6105378 0.61622581 0.61409109 2 -315.6713 196.3344 17 4 1125 1133 0.8123870 0.81807094 0.81593780 2 -316.1431 190.2930 18 2 1134 1142 0.8187893 0.82446962 0.82233944 2 -325.1273 366.0323 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.8836404 1.038548 -0.0003928174 1.3579159 0.003922235 24.621713 3 0.8838279 1.038561 -0.0001216043 -0.3546359 0.007247742 2.762175 5 0.8842807 1.038262 0.0020137731 5.3385878 0.005409152 19.319565 6 0.8842797 1.038204 0.0067958836 2.2304066 0.015537589 12.998812 8 0.8841396 1.038120 -0.0008681768 -18.1271458 0.002176717 18.566066 10 0.8825188 1.036439 -0.0013113832 6.9055722 0.003613385 19.244107 11 0.8824384 1.036407 -0.0022430178 -1.8344033 0.008641504 6.995885 13 0.8806783 1.034056 -0.0025405384 0.7222925 0.006053334 14.557999 14 0.8805294 1.033812 -0.0021978794 -1.2122187 0.006123724 10.691389 17 0.8781149 1.028103 -0.0017890739 -8.0959569 0.004634241 22.472548 18 0.8779494 1.028108 -0.0046716942 -1.2382743 0.011136865 8.136175 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 837.025 co2l1 = 1.358 co2l0 = 190.033" [1] "co2l0 = -166.11 co2l1 = 0.212" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "302 out of 805 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "503 out of 1210 1-min values rejected as stack air" [1] "503 out of 1210 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"