[1] "2025-04-30 03:33:54 MDT" [1] "1711" "171122" "d326" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:33:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.137, ave o2scale2 = 0.966" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "58 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:33:54 MDT" [1] "Plotting 1-minute data" [1] "2025-04-30 03:33:54 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 58 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1349 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:33:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 404.34 O2 = -653.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CA07671 description: LT CO2 = 393.3 O2 = -526.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.374 co2off = 842.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.98 minutes" [1] "Shortest Cal: 6.16 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 8 [5,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 11 19 0.009901968 0.01558670 0.01345584 2 -323.4312 371.6170 3 4 20 28 0.016297685 0.02198025 0.01985027 2 -314.4969 204.5383 7 4 296 304 0.218058738 0.22374292 0.22161135 2 -315.1136 199.9459 8 2 305 313 0.224452940 0.23013372 0.22800383 2 -324.0741 366.9679 10 2 578 586 0.426233299 0.43192251 0.42978599 3 -324.9594 340.9037 11 4 587 595 0.432632442 0.43831628 0.43618530 3 -315.9956 194.1371 12 3 596 604 0.439026331 0.44471247 0.44400272 3 -319.4743 225.9471 14 4 861 869 0.634401470 0.64008259 0.63795178 1 -315.6880 204.6533 18 2 1143 1151 0.842648495 0.84833458 0.84620205 3 -323.7030 368.4425 19 4 1152 1158 0.850466111 0.85474072 0.85331931 3 -314.7131 204.3585 20 3 1159 1166 0.855451343 0.86042322 0.86006805 3 -318.1559 212.0799 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.8810580 1.038281 -5.778778e-03 -0.1261959 0.013535777 13.085561 3 0.8808387 1.038167 3.231338e-04 1.8012355 0.003566961 13.170328 7 0.8802920 1.036035 1.822248e-03 -1.1830914 0.005580312 5.264927 8 0.8803574 1.035921 1.170263e-03 1.0206986 0.007005737 6.642264 10 0.8769449 1.033186 -6.013880e-04 7.6143310 0.002240057 28.927743 11 0.8768058 1.033243 1.772021e-03 -2.6089772 0.006304288 10.955102 12 0.8768105 1.033066 -2.695152e-03 -7.5438515 0.006163931 12.160301 14 0.8779123 1.033618 7.947162e-04 -1.0531025 0.005929145 2.786293 18 0.8823020 1.036169 7.940219e-04 5.6992712 0.004664647 22.020379 19 0.8821495 1.036029 4.879778e-05 -11.9098520 0.001206752 29.450416 20 0.8823829 1.036113 2.269689e-03 -29.0854703 0.005951365 21.037164 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 837.461 co2l1 = 1.359 co2l0 = -108.556" [1] "co2l0 = -168.36 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 457 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "436 out of 1162 1-min values rejected as stack air" [1] "436 out of 1162 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"