[1] "2025-04-30 03:33:47 MDT" [1] "1711" "171121" "d325" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:33:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.146, ave o2scale2 = 0.969" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "79 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:33:47 MDT" [1] "Plotting 1-minute data" [1] "2025-04-30 03:33:47 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 79 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with low FLWTA" [1] "TEMP: 1326 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:33:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 404.34 O2 = -653.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CA07671 description: LT CO2 = 393.3 O2 = -526.1" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 1.446 co2off = 862.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.26 minutes" [1] "Shortest Cal: 4.09 minutes" [1] "Longest Cal: 8.2 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 232 239 0.1768606 0.1825445 0.1806499 3 -324.9794 359.9931 3 4 240 246 0.1832577 0.1875198 0.1860986 3 -316.0665 197.6204 4 3 247 251 0.1917816 0.1946219 0.1981749 3 -319.4696 261.7028 6 4 484 492 0.3851753 0.3908656 0.3887301 2 -314.9809 204.9537 7 2 493 501 0.3915799 0.3972659 0.3951338 2 -323.8640 377.1113 10 2 769 773 0.5963411 0.5991818 0.5984716 3 -323.2608 364.3307 11 4 774 782 0.5998917 0.6055772 0.6034466 3 -314.2396 207.3852 12 3 783 791 0.6062872 0.6119740 0.6112615 3 -317.6941 237.8519 14 4 1052 1060 0.8017370 0.8074183 0.8052875 1 -313.9187 197.8153 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.8631395 1.024277 -0.001125138 -1.2208288 0.005553694 21.035078 3 0.8630043 1.024101 0.010946064 6.3904150 0.017927284 18.367061 4 0.8638298 1.024661 0.002078346 1.3826491 0.002322893 6.177517 6 0.8712381 1.031595 -0.001915426 1.0666782 0.016327927 8.319220 7 0.8716882 1.031871 -0.002503893 2.7920809 0.010879480 8.914685 10 0.8781942 1.035913 0.007334013 -4.7965694 0.007611669 6.446772 11 0.8782504 1.035924 0.004557429 -0.4382437 0.010896018 3.705558 12 0.8785201 1.035886 0.001976370 3.9040657 0.006726591 4.613323 14 0.8814388 1.038465 0.003221684 -2.1036350 0.009321474 7.396770 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 836.662 co2l1 = 1.358 co2l0 = 48.572" [1] "co2l0 = -171.2 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "43 out of 66 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "23 out of 1191 1-min values rejected as stack air" [1] "23 out of 1191 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"