[1] "2025-04-30 03:33:41 MDT"
[1] "1711"   "171120" "d324"  
[1] "No HR file found"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2025-04-30 03:33:41 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.903, ave o2scale2 = 1.023"
[1] "Removing 11 MR FC 1 jog(s) with WT SD > 1000"
[1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000"
[1] "Removing 11 MR FC 1 jog(s) with SP SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000"
[1] "302 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2025-04-30 03:33:41 MDT"
[1] "Plotting 1-minute data"
[1] "2025-04-30 03:33:41 MDT"
[1] "reading in medium-rate plot titles"
[1] "Removed 302 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "Removed 569 row(s) with low FLWTA"
[1] "TEMP: 177 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-30 03:33:43 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4"
[1] "position 2 cylinder CB08905 description: MS CO2 = 404.34 O2 = -653.2"
[1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1"
[1] "position 4 cylinder CA07671 description: LT CO2 = 393.3 O2 = -526.1"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA"
[1] "Nominal linear calibrations:"
[1] "co2scl = 1.37  co2off = 843.5 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "Median Cal: 8.18 minutes"
[1] "Average Cal: 8.18 minutes"
[1] "Shortest Cal: 8.18 minutes"
[1] "Longest Cal: 8.18 minutes"
[1] "Plotting calibration sds and slopes"
[1] "cbind(calstart,calend)"
     calstart calend
[1,]        1      2
[1] "calperiods"
  type posi pose     timei     timee     timea grp    co2sig    o2sig     jfcv1
2    4  135  142 0.9686695 0.9743516 0.9725757   2 -317.3561 217.3326 0.8520020
3    2  143  151 0.9750657 0.9807486 0.9786168   2 -326.2842 383.0144 0.8524769
     jfcv2       co2slp    o2slp      co2sd      o2sd
2 1.018086 -0.006942803 3.080974 0.01720276 11.719145
3 1.018537  0.006381383 3.577321 0.01506356  9.867296
[1] "Plotting calibration fits"
[1] "Average calibration parameters:"
[1] "co2l0 = 841.703  co2l1 = 1.363 co2l0 = 0"
[1] "co2l0 = -172.88  co2l1 = 0.219"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "9 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "1 out of 153 1-min values rejected as stack air"
[1] "1 out of 153 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "making html"