[1] "2025-04-30 03:33:00 MDT" [1] "1708" "170914" "d257" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170914a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 49903 63 [1] 49903 [1] 49903 [1] "testing skipping spike filter" [1] 49903 [1] 49903 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:33:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 1.574" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "429 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 1.574" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "429 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:33:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:33:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:33:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:33:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 429 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 402 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:33:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.445 co2off = 415.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 5.13 minutes" [1] "Average Cal: 5.64 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 77 80 0.1644341 0.1672806 0.1669247 2 -4.188130 346.5745 1.144737 3 4 81 85 0.1679920 0.1708480 0.1701298 2 -1.438187 184.3734 1.144505 6 4 227 232 0.3695093 0.3730689 0.3720014 2 -1.465063 169.9111 1.150829 7 2 233 241 0.3759156 0.3816157 0.3794752 2 -4.195830 325.7447 1.151489 10 2 391 395 0.5781478 0.5817083 0.5809962 2 -4.086226 335.5745 1.161701 11 4 396 402 0.5838436 0.5895367 0.5872593 2 -1.358312 166.1138 1.161683 jfcv2 co2slp o2slp co2sd o2sd 2 0.6344248 -0.0002337779 6.540663e-14 0.000169411 0.000000 3 0.6343032 0.0036001905 1.015633e+01 0.003830898 10.730863 6 0.6346630 0.0026956608 4.600340e+00 0.003592165 6.095277 7 0.6349291 0.0013786678 -2.521766e+00 0.003195805 8.065395 10 0.6375528 0.0011530766 -2.799140e+00 0.001422412 2.869993 11 0.6375946 0.0011492146 3.295761e+00 0.003051959 10.757259 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.356 co2l1 = 4.448 co2l0 = 0" [1] "co2l0 = -164.06 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "20 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 322 1-min values rejected as stack air" [1] "0 out of 322 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"