[1] "2025-04-30 03:25:43 MDT" [1] "1707" "170826" "d238" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170826a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:25:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 1.042" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "86 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 1.042" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "88 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:25:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:25:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:26:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:26:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 88 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1315 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:26:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.47 co2off = 420.87 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.91 minutes" [1] "Shortest Cal: 5.12 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 6 0.001191146 0.004747917 0.003680122 2 -2.059734 172.7749 2 2 7 15 0.005459404 0.011156424 0.009019333 2 -4.786062 330.8739 4 2 283 291 0.206923061 0.212622396 0.210488401 3 -4.871607 333.2529 5 4 292 300 0.213333623 0.219025492 0.216889587 3 -2.132116 171.1112 7 3 310 318 0.226139294 0.231836545 0.231125637 3 -5.651036 309.7634 9 4 575 583 0.414828762 0.420532841 0.418394039 2 -2.131964 171.8009 10 2 584 592 0.421244329 0.426935098 0.424802125 2 -4.861938 330.6495 12 2 866 874 0.622709201 0.628398438 0.626264761 3 -4.835768 322.1400 13 4 875 883 0.629118547 0.634807581 0.632673694 3 -2.099741 171.4188 14 3 884 892 0.635519039 0.641214815 0.640503733 3 -5.636679 320.7441 16 4 1110 1117 0.831270747 0.836248929 0.834470915 2 -2.196740 167.5541 17 2 1118 1125 0.836960214 0.842659028 0.840524339 2 -4.954232 334.0864 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.159535 0.9671033 1.433555e-03 4.880132573 0.0019911098 7.6561045 2 1.159511 0.9669685 1.641963e-03 -0.464025008 0.0037624792 4.5942966 4 1.163042 0.9680013 7.316983e-04 1.571586938 0.0020021844 6.0614340 5 1.162926 0.9677534 1.215565e-03 2.340205956 0.0031497827 5.6790496 7 1.163321 0.9678591 -5.085602e-04 -0.278683363 0.0011901599 0.9689276 9 1.164649 0.9677115 -8.219205e-04 -0.996165525 0.0022640928 7.2882474 10 1.165016 0.9679175 5.624547e-04 2.455591242 0.0019951112 5.5484413 12 1.160231 0.9622400 -1.504205e-04 2.039491954 0.0010883583 9.4873447 13 1.159814 0.9617192 1.939424e-04 1.449670509 0.0009371031 4.3451334 14 1.159462 0.9614957 -1.237989e-03 -0.790406074 0.0030029128 0.8640151 16 1.141273 0.9443434 1.342637e-04 -7.528350405 0.0007431107 15.3349316 17 1.140828 0.9438035 -5.180155e-05 -0.004802079 0.0010961373 5.9474600 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.493 co2l1 = 4.45 co2l0 = -0.254" [1] "co2l0 = -163.91 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "8 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 1144 1-min values rejected as stack air" [1] "2 out of 1144 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"