[1] "2025-04-30 03:25:06 MDT" [1] "1707" "170825" "d237" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170825a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:25:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.864, ave o2scale2 = 1.033" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.864, ave o2scale2 = 1.033" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:25:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:25:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:25:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:25:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1404 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:25:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.458 co2off = 415.78 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.51 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 233 241 0.1658066 0.1715055 0.1693693 2 -1.946214 170.4689 1.159444 3 2 242 250 0.1722167 0.1779027 0.1757705 2 -4.677768 332.9877 1.159422 5 2 526 534 0.3742846 0.3799805 0.3778423 3 -4.700321 331.6118 1.157276 6 4 535 543 0.3806916 0.3863802 0.3842466 3 -1.965902 167.7839 1.157153 7 3 544 552 0.3870912 0.3927850 0.3920738 3 -5.499643 315.2624 1.157083 9 4 818 826 0.5820826 0.5877702 0.5856370 2 -1.987589 172.5705 1.155975 10 2 827 835 0.5884837 0.5941755 0.5920432 2 -4.721446 324.0340 1.156127 13 2 1111 1119 0.7905589 0.7962466 0.7941137 3 -4.736464 326.1633 1.156550 14 4 1120 1128 0.7969578 0.8026557 0.8005212 3 -1.999821 173.9886 1.156486 15 3 1129 1137 0.8033666 0.8090555 0.8083431 3 -5.537777 310.0041 1.156688 jfcv2 co2slp o2slp co2sd o2sd 2 0.9705974 -1.222718e-03 5.4204583 0.0029259207 13.279239 3 0.9706309 -1.090453e-04 5.6632184 0.0004673093 14.903236 5 0.9679444 -1.870067e-04 2.5967797 0.0007193644 5.825229 6 0.9677634 -6.257381e-04 -0.3862750 0.0021987381 8.013165 7 0.9677912 -5.359814e-04 1.9730137 0.0016018846 2.149467 9 0.9661674 -1.919199e-04 -3.5841481 0.0010463585 8.254851 10 0.9662048 -4.034583e-04 1.2883525 0.0011310190 5.263387 13 0.9662914 -4.794895e-05 1.5796027 0.0008606390 5.613015 14 0.9662822 -1.472840e-04 0.2475081 0.0010572349 4.704742 15 0.9662900 9.826974e-05 -2.0840299 0.0014986353 2.158536 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 417.832 co2l1 = 4.453 co2l0 = -0.024" [1] "co2l0 = -164.68 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "52 out of 145 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "93 out of 1257 1-min values rejected as stack air" [1] "93 out of 1257 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"