[1] "2025-04-30 03:24:32 MDT" [1] "1707" "170824" "d236" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170824a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:24:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 1.031" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 1.031" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:24:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:24:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:24:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:24:57 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:25:01 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.477 co2off = 418.52 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 177 185 0.1264267 0.1321251 0.1299891 3 -4.994473 333.7054 1.149216 3 4 186 194 0.1328360 0.1385272 0.1363914 3 -2.254179 173.9019 1.149302 4 3 195 203 0.1392513 0.1449381 0.1442273 3 -5.809188 318.0628 1.149735 6 4 469 477 0.3342649 0.3399622 0.3378236 2 -2.125187 167.5563 1.155074 7 2 478 486 0.3406735 0.3463647 0.3442286 2 -4.872786 327.1831 1.155224 10 2 761 769 0.5423526 0.5480427 0.5459085 3 -4.775821 335.7774 1.158097 11 4 770 778 0.5487609 0.5544497 0.5523163 3 -2.037795 171.0589 1.158195 12 3 779 787 0.5551610 0.5608621 0.5601511 3 -5.561268 306.6530 1.158587 14 4 1053 1061 0.7501819 0.7558703 0.7537368 2 -1.993875 165.5857 1.159866 15 2 1062 1070 0.7565815 0.7622772 0.7601428 2 -4.725045 327.0806 1.159866 17 2 1345 1353 0.9579880 0.9636904 0.9615569 3 -4.676634 332.8061 1.159956 18 4 1354 1362 0.9644015 0.9700984 0.9679592 3 -1.953830 174.7441 1.159711 20 3 1372 1380 0.9772091 0.9829080 0.9821971 3 -5.489821 305.3439 1.159713 jfcv2 co2slp o2slp co2sd o2sd 2 0.9646879 -1.979227e-03 2.768100167 0.0046146925 8.360064 3 0.9647977 -3.274487e-05 0.516543395 0.0005548421 5.271744 4 0.9650538 -1.567914e-03 -4.280984045 0.0036380870 4.482938 6 0.9694469 -9.018929e-04 0.004608869 0.0021803454 5.831723 7 0.9695708 -1.808712e-03 10.822316660 0.0040351414 27.548418 10 0.9714768 7.844275e-05 3.692996608 0.0004926921 10.021385 11 0.9716095 1.427754e-03 -0.377676207 0.0032491414 1.793273 12 0.9718149 1.148278e-03 -1.211628941 0.0027115480 1.241404 14 0.9725375 -2.167284e-06 -2.784574853 0.0015918085 6.315571 15 0.9725846 -1.656586e-04 2.328227718 0.0005656328 5.894578 17 0.9717973 4.490529e-04 0.350101475 0.0011492913 3.887858 18 0.9716197 2.423673e-05 0.280669012 0.0009366067 4.433390 20 0.9716329 -1.006898e-03 -13.433524729 0.0029242673 14.437468 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.245 co2l1 = 4.444 co2l0 = 0.125" [1] "co2l0 = -164 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "141 out of 375 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "234 out of 1211 1-min values rejected as stack air" [1] "234 out of 1211 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"