[1] "2025-04-30 03:23:58 MDT" [1] "1707" "170823" "d235" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170823a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:24:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 1.05" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "119 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 1.05" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "121 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:24:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:24:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:24:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:24:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 121 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1283 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:24:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.438 co2off = 422.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.05 minutes" [1] "Shortest Cal: 6.16 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 98 106 0.08717208 0.09287214 0.09073886 2 -2.653866 173.1859 3 2 107 115 0.09358342 0.09927633 0.09713913 2 -5.421616 334.2774 6 2 355 363 0.29501722 0.30071160 0.29857557 2 -5.519286 334.4570 7 4 364 372 0.30142289 0.30711134 0.30497798 2 -2.748759 172.1457 10 4 610 616 0.50425006 0.50852827 0.50709847 2 -2.727450 173.2522 11 2 617 624 0.50924100 0.51492824 0.51267714 2 -5.487186 332.3878 13 2 880 888 0.71063602 0.71632439 0.71419101 3 -5.499687 331.1053 14 4 889 897 0.71703550 0.72273275 0.72059826 3 -2.746929 169.7638 16 3 907 915 0.72985440 0.73554239 0.73483150 3 -6.326982 313.9581 18 4 1171 1179 0.91854881 0.92423987 0.92210579 2 -2.466732 164.1112 19 2 1180 1188 0.92495133 0.93065341 0.92851235 2 -5.212643 338.1023 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.129494 0.9508010 -1.436598e-03 0.02585787 0.0032404565 2.1047619 3 1.129453 0.9508106 9.211207e-04 0.21091701 0.0022326964 2.4216145 6 1.127455 0.9483259 2.959580e-04 0.43394545 0.0008598822 15.3809549 7 1.127315 0.9483443 6.104215e-05 0.69012265 0.0012450049 16.5879989 10 1.130751 0.9505479 -2.999655e-05 0.05271506 0.0006082120 0.5516058 11 1.131013 0.9508046 1.197310e-03 1.96709760 0.0029402826 5.2850581 13 1.136692 0.9550655 -1.916088e-03 2.47524989 0.0042473950 7.7225531 14 1.136400 0.9548644 -1.448260e-03 0.39968082 0.0032756258 2.9084270 16 1.136560 0.9550110 1.140373e-03 4.57954032 0.0029075858 4.8194955 18 1.142417 0.9590976 1.738726e-03 3.05312754 0.0042150392 12.5452180 19 1.142646 0.9593784 8.150990e-04 2.27853142 0.0022591579 7.4228698 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.789 co2l1 = 4.406 co2l0 = 0.91" [1] "co2l0 = -163.12 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "2 out of 1055 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "1053 out of 1112 1-min values rejected as stack air" [1] "1053 out of 1112 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"