[1] "2025-04-30 03:23:24 MDT" [1] "1707" "170822" "d234" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170822a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:23:28 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.878, ave o2scale2 = 1.039" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "86 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.878, ave o2scale2 = 1.039" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "88 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:23:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:23:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:23:48 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:23:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 88 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1315 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:23:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.437 co2off = 417.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.47 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 8.23 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 64 72 0.04744494 0.05314575 0.05101274 3 -5.392366 331.3876 3 4 73 81 0.05385703 0.05955573 0.05741496 3 -2.623705 171.3421 4 3 82 90 0.06026687 0.06595645 0.06524490 3 -6.181063 309.0601 6 4 350 358 0.25534627 0.26104595 0.25890834 2 -2.513384 170.1164 7 2 359 367 0.26175761 0.26744974 0.26531541 2 -5.262339 327.3143 9 2 639 647 0.46331887 0.46902237 0.46687886 3 -5.170714 331.5359 10 4 648 656 0.46973383 0.47542853 0.47329169 3 -2.417527 175.0937 12 3 666 674 0.48257011 0.48826212 0.48755063 3 -5.980500 323.8066 14 4 912 918 0.67271756 0.67698678 0.67556351 1 -2.521088 170.0307 17 2 1173 1179 0.87925396 0.88352364 0.88209984 3 -5.314875 333.3588 18 4 1180 1187 0.88565929 0.89136073 0.88910339 3 -2.558457 177.5502 19 3 1188 1195 0.89207231 0.89776392 0.89740781 3 -6.141103 326.7683 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.136109 0.9622889 -0.0006126535 1.4034832 0.0019057986 6.132167 3 1.136006 0.9623081 0.0022850187 -2.7203934 0.0051304232 9.386565 4 1.136325 0.9623911 0.0011767663 -3.7133444 0.0027168935 3.954874 6 1.143003 0.9668801 0.0009938547 0.5110261 0.0026583762 2.671904 7 1.143335 0.9672025 0.0011568372 -1.3003901 0.0027149416 6.872694 9 1.143515 0.9659786 0.0006727519 1.8185395 0.0025095799 6.823533 10 1.143392 0.9659433 -0.0001502553 4.1586839 0.0008591247 11.663423 12 1.143356 0.9658921 -0.0003943006 3.2763968 0.0018049411 3.464765 14 1.141139 0.9625778 0.0005123325 -7.0326440 0.0008723173 12.938387 17 1.134366 0.9553485 0.0001647909 3.6305661 0.0008184876 7.906806 18 1.134318 0.9553460 -0.0011072143 0.1741244 0.0027137413 4.695257 19 1.134126 0.9552114 -0.0024073321 3.9815973 0.0064164708 2.887442 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.186 co2l1 = 4.412 co2l0 = 0.038" [1] "co2l0 = -164.75 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "86 out of 1119 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "1033 out of 1159 1-min values rejected as stack air" [1] "1033 out of 1159 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"