[1] "2025-04-30 03:22:51 MDT" [1] "1707" "170821" "d233" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170821a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:22:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 1.035" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "31 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 1.035" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "31 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:22:56 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:22:56 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:23:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:23:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1371 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:23:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.441 co2off = 421.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 8.21 minutes" [1] "Shortest Cal: 8.2 minutes" [1] "Longest Cal: 8.23 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 9 17 0.007218924 0.01291522 0.01078168 2 -2.249482 175.2085 3 2 18 26 0.013626881 0.01934219 0.01719439 2 -4.994018 325.6330 5 2 288 296 0.215235475 0.22094277 0.21880256 3 -5.010571 330.5586 6 4 297 305 0.221654948 0.22734931 0.22521413 3 -2.257652 165.1606 8 3 315 323 0.234478328 0.24017925 0.23946529 3 -5.824554 311.6229 10 4 580 588 0.423278414 0.42898255 0.42684032 2 -2.267161 171.4633 11 2 589 597 0.429694936 0.43538918 0.43325386 2 -5.023071 337.9491 13 2 868 876 0.631365567 0.63706082 0.63492491 3 -5.049366 329.9108 14 4 877 885 0.637773032 0.64348157 0.64134555 3 -2.310054 167.0242 15 3 886 894 0.644193547 0.64990116 0.64918519 3 -5.898473 307.9585 17 4 1152 1159 0.839412992 0.84510877 0.84297282 2 -2.554032 172.2722 18 2 1160 1168 0.845820891 0.85152561 0.84938736 2 -5.326464 329.9649 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.141870 0.9755401 4.184680e-04 3.65380503 0.001274098 9.419739 3 1.141590 0.9753376 1.582461e-03 0.46136601 0.003957409 3.641736 5 1.138666 0.9725563 1.377718e-04 0.93131452 0.001694595 2.515559 6 1.138384 0.9722795 6.990947e-04 2.13194938 0.001709295 8.973069 8 1.138411 0.9720939 -5.502587e-04 -1.67838954 0.001433613 3.314247 10 1.135133 0.9667090 6.795263e-04 -1.70366230 0.001988527 4.638514 11 1.135106 0.9666723 6.096501e-05 0.44479075 0.001410262 7.260737 13 1.134952 0.9643452 -4.942486e-04 -0.05355469 0.001608663 3.569222 14 1.135068 0.9644911 -3.252599e-03 3.73900476 0.007238355 8.638755 15 1.135172 0.9643951 -1.601967e-03 -4.72001696 0.003645570 5.068508 17 1.132313 0.9603261 4.833414e-04 -1.46449472 0.001513739 5.550170 18 1.132373 0.9604285 -1.798590e-03 1.74473136 0.004020594 5.295238 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 419.305 co2l1 = 4.412 co2l0 = 0.416" [1] "co2l0 = -163.84 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 929 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "866 out of 1194 1-min values rejected as stack air" [1] "866 out of 1194 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"