[1] "2025-04-30 03:22:20 MDT" [1] "1707" "170820" "d232" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170820a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83842 63 [1] 83842 [1] 83842 [1] "testing skipping spike filter" [1] 83842 [1] 83842 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:22:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 1.01" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "25 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 1.01" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "27 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:22:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:22:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:22:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:22:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 27 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1369 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:22:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.448 co2off = 418.82 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 228 236 0.1749204 0.1806289 0.1784870 2 -2.219509 167.4149 1.162626 3 2 237 245 0.1813400 0.1870292 0.1848956 2 -4.931402 331.8692 1.162526 5 2 514 522 0.3828592 0.3885606 0.3864174 3 -4.923554 332.6336 1.159829 6 4 523 531 0.3892723 0.3949639 0.3928294 3 -2.183857 170.1563 1.159542 7 3 532 540 0.3956754 0.4013734 0.4006622 3 -5.712446 314.0910 1.159514 9 4 806 814 0.5910080 0.5967000 0.5945648 2 -2.186830 170.5866 1.155576 10 2 815 823 0.5974116 0.6031100 0.6009763 2 -4.922768 328.5069 1.155491 13 2 1089 1097 0.7992326 0.8049224 0.8027884 3 -4.956429 329.9602 1.148742 14 4 1098 1106 0.8056337 0.8113323 0.8091956 3 -2.153821 167.3712 1.148178 15 3 1107 1115 0.8120441 0.8177334 0.8170224 3 -5.608732 312.0628 1.148140 jfcv2 co2slp o2slp co2sd o2sd 2 0.9967516 3.281490e-04 -0.8688567 0.0017280727 2.3262112 3 0.9965398 3.230228e-03 0.5583973 0.0071731612 4.8971044 5 0.9935589 1.890384e-04 1.1788100 0.0009772334 3.4022840 6 0.9932234 1.411748e-03 0.3802564 0.0031923399 1.2138208 7 0.9933299 3.787197e-04 0.9537220 0.0015471869 1.9571396 9 0.9891777 -1.075279e-05 1.1682672 0.0015231351 3.3166934 10 0.9890072 1.983541e-04 0.9323753 0.0012503720 3.2477191 13 0.9822629 3.833459e-03 3.5333414 0.0085501301 9.0021553 14 0.9817549 9.049780e-03 -2.1045457 0.0201110986 4.8659518 15 0.9815475 8.933174e-03 -0.6873505 0.0200303063 0.7885474 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.826 co2l1 = 4.47 co2l0 = -1.574" [1] "co2l0 = -163.11 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "86 out of 285 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "199 out of 1223 1-min values rejected as stack air" [1] "199 out of 1223 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"