[1] "2025-04-30 03:21:05 MDT" [1] "1707" "170818" "d230" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170818a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:21:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.999" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "15 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.999" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:21:09 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:21:09 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:21:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:21:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1387 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:21:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.462 co2off = 418.68 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 127 135 0.09567627 0.1013784 0.09924067 2 -2.161125 172.5305 3 2 136 144 0.10209010 0.1077794 0.10564617 2 -4.903473 341.2188 6 2 414 422 0.30352101 0.3092246 0.30708111 3 -4.905339 330.4264 7 4 423 431 0.30993562 0.3156246 0.31349110 3 -2.175973 170.3944 8 3 432 440 0.31633573 0.3220319 0.32132091 3 -5.709375 305.3566 10 4 706 714 0.51141169 0.5171018 0.51496751 2 -2.148170 171.5097 11 2 715 723 0.51781305 0.5235121 0.52137885 2 -4.885241 332.7908 13 2 998 1006 0.71928070 0.7249704 0.72283644 3 -4.926527 328.7443 14 4 1007 1015 0.72568166 0.7313766 0.72924141 3 -2.200616 177.8749 16 3 1025 1032 0.73849051 0.7441880 0.74383235 3 -5.725865 262.0738 18 4 1287 1295 0.92713475 0.9328311 0.93069740 2 -2.130509 167.7274 19 2 1296 1304 0.93354245 0.9392428 0.93710182 2 -4.860741 329.8271 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.157241 0.9983547 6.742878e-05 -1.828013e+00 0.000881671 6.594500 3 1.157326 0.9985621 -1.096544e-03 2.339679e+00 0.002648913 16.573698 6 1.159267 0.9994979 -1.198197e-03 1.155004e+00 0.003028910 9.747207 7 1.159167 0.9994589 3.880125e-04 -7.336460e-01 0.001023714 3.784012 8 1.159468 0.9995432 -1.405779e-03 -4.190636e+00 0.003190154 6.082726 10 1.161822 1.0011250 6.929963e-04 -3.587117e+00 0.001622480 10.015894 11 1.161945 1.0013600 1.155380e-03 -2.712891e-01 0.003169769 2.869905 13 1.163299 1.0019039 -7.257741e-04 2.266287e+00 0.002643254 5.531757 14 1.163187 1.0018262 7.247671e-04 3.208663e+00 0.001815525 7.202902 16 1.163379 1.0021570 9.737862e-04 4.982571e-14 0.002399436 0.000000 18 1.165515 1.0032663 -4.228610e-04 -2.274568e+00 0.001276505 7.106071 19 1.165589 1.0033770 7.301431e-04 -1.453878e-01 0.001772706 4.173284 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.669 co2l1 = 4.453 co2l0 = 0.099" [1] "co2l0 = -163.88 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 70 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "60 out of 1210 1-min values rejected as stack air" [1] "60 out of 1210 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"