[1] "2025-04-30 03:19:18 MDT" [1] "1707" "170815" "d227" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170815a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:19:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.878, ave o2scale2 = 1.005" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.878, ave o2scale2 = 1.005" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:19:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:19:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:19:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:19:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1393 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:19:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.432 co2off = 421.86 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 8.1 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 8.2 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 254 262 0.1830469 0.1887447 0.1866047 2 -2.337366 175.4041 1.138817 3 2 263 271 0.1894556 0.1951421 0.1930097 2 -5.094321 320.4018 1.138799 5 2 547 555 0.3915076 0.3971939 0.3950612 3 -5.088152 325.8710 1.140760 6 4 556 564 0.3979106 0.4036007 0.4014677 3 -2.338116 166.4569 1.140792 7 3 565 573 0.4043116 0.4100053 0.4092947 3 -5.903625 317.5350 1.140777 9 4 839 846 0.5993681 0.6043452 0.6025674 2 -2.315302 158.8112 1.139384 10 2 847 855 0.6057672 0.6114589 0.6093254 2 -5.082830 337.4758 1.139480 13 2 1131 1139 0.8078387 0.8135257 0.8113929 3 -5.101411 322.7098 1.138805 14 4 1140 1148 0.8142366 0.8199328 0.8177945 3 -2.355821 160.5535 1.138690 15 3 1149 1157 0.8206437 0.8263295 0.8256189 3 -5.937330 316.5306 1.138877 jfcv2 co2slp o2slp co2sd o2sd 2 0.9959348 -0.0003023788 1.6429758 0.0007683761 7.622327 3 0.9959371 0.0015439605 0.2116707 0.0034398531 14.264222 5 0.9969548 -0.0011295309 3.3425862 0.0027873545 8.221828 6 0.9968694 0.0010639551 -0.2427263 0.0026470868 2.945825 7 0.9969625 -0.0007960564 3.2631030 0.0018200275 3.346814 9 0.9950576 -0.0005284584 -6.5419512 0.0014542055 13.330996 10 0.9952785 -0.0027179023 2.4515024 0.0064094976 7.017786 13 0.9939035 -0.0008416696 0.7121325 0.0019151456 3.531243 14 0.9939115 -0.0012574441 -3.8714108 0.0031832955 9.908315 15 0.9939713 -0.0013479115 5.8769628 0.0031126243 6.068244 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 419.335 co2l1 = 4.409 co2l0 = 0.38" [1] "co2l0 = -162.14 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "59 out of 128 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "69 out of 1248 1-min values rejected as stack air" [1] "69 out of 1248 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"