[1] "2025-04-30 03:18:41 MDT" [1] "1707" "170814" "d226" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170814a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:18:44 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.882, ave o2scale2 = 1.005" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.882, ave o2scale2 = 1.005" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:18:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:18:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:19:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:19:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1385 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:19:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.437 co2off = 422.05 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.07 minutes" [1] "Shortest Cal: 6.14 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 198 206 0.1432369 0.1489369 0.1467952 3 -5.050821 319.3235 1.135900 3 4 207 213 0.1510699 0.1553360 0.1539138 3 -2.307488 162.4408 1.135678 4 3 214 222 0.1560474 0.1617423 0.1610313 3 -5.875295 306.4092 1.135580 6 4 483 491 0.3510370 0.3567256 0.3545921 2 -2.322661 172.9970 1.132971 7 2 492 500 0.3574371 0.3631324 0.3609990 2 -5.082964 325.7024 1.132913 10 2 775 783 0.5588809 0.5645701 0.5624364 3 -5.111357 331.2367 1.131538 11 4 784 792 0.5652815 0.5709808 0.5688442 3 -2.357321 171.4872 1.131380 12 3 793 801 0.5716923 0.5773801 0.5766690 3 -5.929893 310.8922 1.131224 14 4 1061 1069 0.7667158 0.7724166 0.7702832 2 -2.340848 171.0932 1.131803 15 2 1070 1078 0.7731278 0.7788249 0.7766852 2 -5.104598 323.6488 1.132053 17 2 1350 1358 0.9745404 0.9802459 0.9781051 3 -5.050313 331.2953 1.135700 18 4 1359 1367 0.9809571 0.9866464 0.9845130 3 -2.295920 166.8627 1.135833 20 3 1377 1385 0.9937692 0.9994652 0.9987509 3 -5.881848 317.8807 1.136168 jfcv2 co2slp o2slp co2sd o2sd 2 1.0003909 -1.132342e-03 3.2566639 0.0026478245 11.4367636 3 1.0000957 -3.479128e-04 -3.5393619 0.0009263925 7.7943407 4 1.0000275 -8.995077e-04 7.3446008 0.0022096245 7.5794608 6 0.9949669 -5.470782e-04 -1.4154417 0.0018459052 5.3794195 7 0.9947803 2.375934e-04 2.4917307 0.0006543695 6.0942670 10 0.9922718 6.753112e-05 2.3291673 0.0010841629 6.5368407 11 0.9920557 3.789041e-04 -0.1021809 0.0015923926 4.8040217 12 0.9919948 -9.570744e-04 0.4159111 0.0023631046 0.6212944 14 0.9923568 -1.741618e-03 -1.1093344 0.0040808651 4.7057163 15 0.9924601 -6.346659e-05 1.2238449 0.0007069752 4.9554068 17 0.9942181 -6.523294e-04 -0.7475362 0.0020558605 8.0868419 18 0.9942544 -2.614077e-05 0.3296601 0.0011949951 5.3886943 20 0.9943598 -1.251790e-03 5.1843835 0.0029147740 5.4149883 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 419.278 co2l1 = 4.407 co2l0 = 0.376" [1] "co2l0 = -164.11 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "38 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "22 out of 1205 1-min values rejected as stack air" [1] "22 out of 1205 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"