[1] "2025-04-30 03:18:07 MDT" [1] "1707" "170813" "d225" Read 2 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170813a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:18:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.975" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 11 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 13 MR FC 2 jog(s) with SP SD > 1000" [1] "189 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.975" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 14 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 13 RC FC 2 jog(s) with SP SD > 1000" [1] "191 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:18:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:18:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:18:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:18:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 191 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 119 manually filtered row(s) from a screenall period" [1] "TEMP: 1094 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:18:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.448 co2off = 416.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.79 minutes" [1] "Shortest Cal: 6.16 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 136 144 0.1032789 0.1089860 0.1068389 2 -2.161768 170.1440 1.165388 3 2 145 153 0.1096972 0.1153852 0.1132523 2 -4.888393 338.9882 1.165379 7 4 421 429 0.3181133 0.3238038 0.3216694 2 -2.198089 162.2803 1.157300 8 3 430 438 0.3245156 0.3302128 0.3295016 2 -5.719589 301.6261 1.157032 10 4 685 692 0.5203028 0.5252823 0.5235037 2 -2.219833 171.9837 1.150193 11 2 693 699 0.5259938 0.5302709 0.5288459 2 -4.967250 332.3587 1.150095 13 4 1004 1012 0.9353960 0.9410977 0.9389605 2 -2.293107 168.9539 1.139186 14 2 1013 1021 0.9418091 0.9474985 0.9453651 2 -5.051455 322.2373 1.139310 jfcv2 co2slp o2slp co2sd o2sd 2 1.044343 -6.119524e-05 -0.04125994 0.0029929854 4.276029 3 1.044317 -8.633801e-04 6.14381405 0.0019637716 15.473866 7 1.034631 1.616709e-03 3.58215992 0.0036509233 24.310192 8 1.034353 4.438196e-04 5.22823587 0.0011769582 5.609865 10 1.022452 1.094706e-03 -4.49168745 0.0023051121 9.501772 11 1.022163 -1.867838e-03 3.16625199 0.0030564353 5.500703 13 1.006626 6.242884e-04 0.76103467 0.0015830788 8.358272 14 1.006517 2.070765e-04 0.90090003 0.0004917474 8.299510 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.898 co2l1 = 4.445 co2l0 = 0" [1] "co2l0 = -163.46 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "177 out of 720 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "543 out of 966 1-min values rejected as stack air" [1] "543 out of 966 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"