[1] "2025-04-30 03:17:51 MDT" [1] "1707" "170812" "d224" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170812a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 43560 63 [1] 43560 [1] 43560 [1] "testing skipping spike filter" [1] 43560 [1] 43560 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:17:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.95" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "89 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.95" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "89 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:17:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:17:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:18:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:18:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 89 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 15 row(s) with variable TFCELL" [1] "TEMP: 621 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:18:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.524 co2off = 416.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.98 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 188 196 0.6864530 0.6921519 0.6900169 2 -2.230304 164.7778 1.173586 4 2 197 204 0.6928635 0.6978405 0.6960631 2 -4.939385 300.6129 1.173832 6 2 478 486 0.8948649 0.9005579 0.8984223 3 -4.897063 320.4355 1.171374 7 4 487 495 0.9012692 0.9069577 0.9048244 3 -2.181366 167.2186 1.171161 8 3 496 504 0.9076687 0.9133597 0.9126489 3 -5.696482 312.7275 1.171022 jfcv2 co2slp o2slp co2sd o2sd 3 1.054326 0.0025522736 -0.8521912 0.006429650 4.927532 4 1.054460 0.0012437842 10.1625613 0.002831303 20.249115 6 1.051236 -0.0001133394 4.5711744 0.001130772 13.784599 7 1.050963 0.0002877370 -2.3873806 0.001235556 7.361583 8 1.051003 0.0010728255 11.3924679 0.002504349 11.670172 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.928 co2l1 = 4.485 co2l0 = 0.088" [1] "co2l0 = -166.49 co2l1 = 0.248" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "96 out of 155 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "59 out of 535 1-min values rejected as stack air" [1] "59 out of 535 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"