[1] "2025-04-30 03:15:08 MDT" [1] "1706" "170806" "d218" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170806a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:15:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.841, ave o2scale2 = 0.908" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.841, ave o2scale2 = 0.908" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:15:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:15:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:15:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:15:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1382 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:15:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.66 co2off = 416.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.61 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 2 [3,] 3 5 [4,] 6 7 [5,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 4 11 0.003806771 0.00950191 0.009146441 1 -5.732813 318.7904 4 4 275 283 0.198829977 0.20452046 0.202386752 1 -2.060616 166.4557 8 2 556 564 0.406669155 0.41235914 0.410225165 3 -4.710250 327.2817 9 4 565 573 0.413070255 0.41876230 0.416628117 3 -2.022830 166.7525 10 3 574 582 0.419473727 0.42516279 0.424451514 3 -5.507196 316.0088 12 4 846 853 0.614486719 0.62017697 0.617924894 2 -1.951021 165.4003 13 2 854 862 0.620888166 0.62658432 0.624446391 2 -4.630598 323.2584 15 2 1135 1143 0.822295486 0.82799826 0.825860809 3 -4.574473 331.9559 16 4 1144 1152 0.828709230 0.83439855 0.832264926 3 -1.898946 167.8047 18 3 1162 1170 0.841520747 0.84721606 0.846504234 3 -5.365330 318.6267 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.174733 1.087547 1.925270e-03 6.798618 0.0039216945 4.921523 4 1.180669 1.093056 3.203220e-04 7.057600 0.0020432908 26.661206 8 1.188829 1.100686 -5.774623e-04 1.222662 0.0016543818 6.724883 9 1.188895 1.100645 -2.061817e-06 -1.133504 0.0008297169 5.513138 10 1.189029 1.100887 -2.610684e-05 -3.961428 0.0012062276 4.837968 12 1.194664 1.106014 8.328586e-05 -6.084385 0.0006303765 19.743749 13 1.195094 1.106422 5.410767e-04 -2.295932 0.0016637437 9.699601 15 1.197673 1.108629 -7.516706e-05 1.551251 0.0016484119 3.648204 16 1.197661 1.108513 -1.569266e-04 -1.138399 0.0009024190 3.133205 18 1.197687 1.108411 -8.310153e-04 12.923421 0.0020212782 13.390226 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.248 co2l1 = 4.525 co2l0 = 0.277" [1] "co2l0 = -162.66 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 45 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "15 out of 1211 1-min values rejected as stack air" [1] "15 out of 1211 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"