[1] "2025-04-30 03:14:09 MDT" [1] "1706" "170804" "d216" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170804a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:14:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.951" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 3 MR FC 2 jog(s) with SP SD > 1000" [1] "115 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.951" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 3 RC FC 2 jog(s) with SP SD > 1000" [1] "114 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:14:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:14:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:14:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:14:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 114 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1289 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:14:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.476 co2off = 421.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.06 minutes" [1] "Shortest Cal: 6.15 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 125 133 0.09339514 0.09908449 0.09695076 2 -2.264955 177.8204 3 2 134 142 0.09979595 0.10550773 0.10336115 2 -5.014964 323.8049 6 2 395 403 0.30130231 0.30700249 0.30486675 3 -4.974625 325.9938 7 4 404 411 0.30771406 0.31340477 0.31127054 3 -2.228585 159.5407 8 3 412 420 0.31412954 0.31982057 0.31910927 3 -5.771259 308.3661 10 4 656 664 0.50924569 0.51495113 0.51280886 2 -2.195848 173.0552 11 2 665 673 0.51566291 0.52135451 0.51922018 2 -4.930152 323.9482 13 2 934 942 0.71725917 0.72295162 0.72081663 3 -5.024670 332.1160 14 4 943 951 0.72367031 0.72936259 0.72722781 3 -2.289580 171.5604 16 3 961 969 0.73648834 0.74218006 0.74146861 3 -5.833152 318.1210 18 4 1205 1210 0.92523678 0.92950666 0.92826131 2 -2.237904 176.3342 19 2 1211 1219 0.93164170 0.93734540 0.93520934 2 -4.965446 315.1539 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.129423 1.045823 3.116642e-04 -2.8818734 0.0010133961 11.914344 3 1.129578 1.045905 -5.986736e-04 1.4262431 0.0016253434 5.338746 6 1.133795 1.049777 5.460567e-04 1.4584799 0.0012405896 4.421768 7 1.134037 1.049976 -5.667068e-05 -0.2346932 0.0005865132 3.247391 8 1.134488 1.050601 -4.380343e-04 -4.0624963 0.0011733968 4.296152 10 1.137270 1.053653 7.634979e-04 6.3694087 0.0018641551 15.264224 11 1.137637 1.053891 4.052847e-04 -2.3096127 0.0018381295 6.441685 13 1.137539 1.053103 -7.297984e-04 5.7957612 0.0022359848 14.417025 14 1.137462 1.052927 -5.315606e-04 3.7099627 0.0019161166 8.429985 16 1.138138 1.053411 -8.715792e-05 6.1644001 0.0007179408 6.402758 18 1.141100 1.056338 1.598725e-03 5.1438781 0.0028301923 14.495992 19 1.141850 1.056926 8.587596e-04 8.8908098 0.0019785400 21.679446 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 419.009 co2l1 = 4.445 co2l0 = 0.04" [1] "co2l0 = -166.23 co2l1 = 0.238" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "14 out of 30 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "16 out of 1115 1-min values rejected as stack air" [1] "16 out of 1115 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"