[1] "2025-04-30 03:13:34 MDT" [1] "1706" "170803" "d215" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170803a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:13:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.956" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "130 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.956" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "130 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:13:39 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:13:39 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:13:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:14:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 130 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1273 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:14:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.479 co2off = 416.87 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.62 minutes" [1] "Shortest Cal: 3.09 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 74 82 0.05365307 0.05934537 0.05721066 3 -5.004063 319.9792 3 4 83 91 0.06005732 0.06575417 0.06361708 3 -2.258357 171.8983 4 3 92 100 0.06646557 0.07215553 0.07144437 3 -5.793607 307.9011 6 4 350 358 0.26157277 0.26727763 0.26514080 1 -2.258384 174.0037 9 2 610 613 0.47310379 0.47525260 0.47489679 3 -5.059125 328.5675 10 4 614 622 0.47596400 0.48165489 0.47952065 3 -2.312152 163.4102 12 3 632 640 0.48877740 0.49447445 0.49375903 3 -5.867152 307.5273 14 4 859 866 0.67823093 0.68321204 0.68143232 2 -2.358635 173.5628 15 2 867 874 0.68393359 0.68962486 0.68737203 2 -5.107897 325.7482 17 2 1119 1127 0.88545778 0.89115055 0.88901547 3 -5.061179 346.9646 18 4 1128 1135 0.89186201 0.89685472 0.89507377 3 -2.311885 166.0080 19 3 1136 1143 0.89898915 0.90397292 0.90361526 3 -5.865375 319.6531 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.138363 1.052137 1.102376e-03 -10.0110527 0.0025925575 29.101453 3 1.138288 1.052001 2.849426e-04 -1.3284220 0.0018447964 8.708615 4 1.138273 1.052159 -5.731736e-04 23.1203840 0.0014837287 23.803801 6 1.137166 1.051067 -5.178539e-04 0.1374752 0.0013604479 2.636584 9 1.130546 1.045590 9.758478e-04 -5.1882144 0.0007071068 3.759420 10 1.130189 1.045254 4.510381e-04 -1.7988367 0.0011352870 5.813013 12 1.129847 1.044980 -3.199141e-04 4.4613134 0.0007879770 4.999719 14 1.122017 1.039018 -5.035216e-04 3.2775149 0.0010104274 7.236171 15 1.122199 1.039184 1.267693e-05 2.9279352 0.0009421179 10.019053 17 1.126069 1.042803 1.080318e-03 6.9936417 0.0026914768 20.864129 18 1.126109 1.042899 8.572372e-04 -7.5764319 0.0016542637 15.561792 19 1.126144 1.042837 -1.286146e-04 2.2082711 0.0006555055 1.608393 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 419.236 co2l1 = 4.434 co2l0 = -0.1" [1] "co2l0 = -163.56 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "23 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "177 out of 1114 1-min values rejected as stack air" [1] "177 out of 1114 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"