[1] "2025-04-30 03:10:07 MDT" [1] "1706" "170727" "d208" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170727a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:10:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 0.96" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 0.96" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:10:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:10:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:10:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:10:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1381 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:10:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.438 co2off = 419.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 196 204 0.1414993 0.1471889 0.1450550 2 -2.801446 178.8562 1.131653 3 2 205 213 0.1479003 0.1535978 0.1514608 2 -5.553580 326.0754 1.132058 5 2 486 493 0.3493609 0.3550594 0.3532811 3 -5.587237 343.7936 1.130948 6 4 494 502 0.3557708 0.3614652 0.3593269 3 -2.831125 171.2458 1.131041 8 3 512 520 0.3685802 0.3742795 0.3735679 3 -6.384759 313.1332 1.131561 10 4 765 773 0.5572340 0.5629355 0.5607952 2 -2.810143 182.3893 1.131578 11 2 774 782 0.5636467 0.5693389 0.5672029 2 -5.551330 345.0751 1.131711 13 2 1052 1060 0.7650957 0.7707845 0.7686509 3 -5.538205 337.5908 1.132856 14 4 1061 1069 0.7715067 0.7771962 0.7750623 3 -2.770902 180.8927 1.133149 15 3 1070 1078 0.7779072 0.7836036 0.7828924 3 -6.324509 317.3335 1.133272 17 4 1344 1352 0.9729449 0.9786340 0.9765004 2 -2.784473 177.6251 1.134980 18 2 1353 1361 0.9793453 0.9850431 0.9829087 2 -5.527634 335.6331 1.135291 jfcv2 co2slp o2slp co2sd o2sd 2 1.039102 -0.0002855041 1.0474705 0.0009031402 4.400959 3 1.039478 -0.0007349913 6.6982921 0.0024581694 22.051909 5 1.039992 -0.0001294616 3.7180393 0.0005118152 11.521674 6 1.040174 0.0010956269 2.2373581 0.0025607209 13.691491 8 1.040368 -0.0011802370 8.7067107 0.0026534737 8.961359 10 1.041527 -0.0002798906 -0.8030362 0.0012918587 5.976280 11 1.041595 0.0021193828 1.1232066 0.0047114270 11.639985 13 1.042365 0.0021861487 2.3533383 0.0050114081 6.386432 14 1.042536 0.0009457998 -0.6670982 0.0026543148 7.001521 15 1.042872 -0.0001176156 -3.4693904 0.0004887119 3.553528 17 1.045086 0.0006080862 0.4760161 0.0016531446 4.291699 18 1.045338 -0.0009985052 2.6286506 0.0024554437 12.545255 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 421.439 co2l1 = 4.429 co2l0 = -0.403" [1] "co2l0 = -166.12 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "28 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "22 out of 1213 1-min values rejected as stack air" [1] "22 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"