[1] "2025-04-30 03:09:00 MDT" [1] "1706" "170725" "d206" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170725a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:09:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.863, ave o2scale2 = 0.947" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.863, ave o2scale2 = 0.947" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:09:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:09:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:09:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:09:27 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1388 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:09:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.485 co2off = 423.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.81 minutes" [1] "Shortest Cal: 3.07 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 85 93 0.06186155 0.06755211 0.06541787 2 -2.677214 182.9915 3 2 94 102 0.06826369 0.07396343 0.07182648 2 -5.391955 331.9128 5 2 377 385 0.26972448 0.27542367 0.27328958 3 -5.389875 335.6799 6 4 386 394 0.27613510 0.28183206 0.27969232 3 -2.660848 176.3357 7 3 395 403 0.28254427 0.28823325 0.28752220 3 -6.175813 324.8953 9 4 666 674 0.47771690 0.48341548 0.48127755 2 -2.635562 182.3306 10 2 675 683 0.48412697 0.48981470 0.48768191 2 -5.359330 339.5442 13 2 954 962 0.68570394 0.69140570 0.68926101 3 -5.351580 342.5257 14 4 963 971 0.69211684 0.69780527 0.69567207 3 -2.634429 183.8745 15 3 972 980 0.69851658 0.70421259 0.70350170 3 -6.163902 326.5512 17 4 1245 1248 0.89355651 0.89568927 0.89533387 2 -2.646437 180.5467 18 2 1249 1257 0.89996021 0.90565692 0.90352409 2 -5.366643 345.1197 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.158933 1.054184 0.0004575657 -2.6229286 0.0011455627 8.2155836 3 1.159117 1.054316 0.0009305936 -4.5332276 0.0025932390 15.7104331 5 1.159442 1.056019 -0.0001133353 2.9427359 0.0006653633 6.7421251 6 1.159353 1.055853 0.0008531255 0.2346185 0.0020440644 6.5337878 7 1.159466 1.056115 0.0004272280 2.3731895 0.0015368732 2.8498183 9 1.159612 1.056855 0.0007708362 1.1978117 0.0022052848 4.7419545 10 1.159958 1.057092 -0.0002354811 -0.3344506 0.0009991626 5.1686448 13 1.159891 1.058016 0.0008815971 1.5979850 0.0020478375 5.0326658 14 1.159784 1.057848 -0.0016895575 0.3282761 0.0038484352 6.9628856 15 1.159745 1.057987 -0.0012530499 3.1987114 0.0028618033 3.5083438 17 1.157943 1.056846 0.0018318746 -1.2219506 0.0013258252 0.8843908 18 1.157996 1.057009 -0.0001090413 5.2475641 0.0004810393 12.0870234 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.893 co2l1 = 4.472 co2l0 = 0.054" [1] "co2l0 = -166.78 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "122 out of 384 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "262 out of 1224 1-min values rejected as stack air" [1] "262 out of 1224 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"