[1] "2025-04-30 03:08:23 MDT" [1] "1706" "170724" "d205" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170724a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:08:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 0.956" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "36 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.865, ave o2scale2 = 0.956" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "36 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:08:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:08:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:08:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:08:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 36 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1367 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:08:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.478 co2off = 421.25 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.24 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 31 39 0.02204479 0.02773565 0.02560130 3 -5.336786 339.4430 3 4 40 48 0.02844745 0.03414748 0.03201059 3 -2.622759 173.2708 4 3 49 57 0.03485894 0.04054852 0.03983709 3 -6.153205 318.8909 6 4 311 319 0.22994745 0.23565035 0.23351589 2 -2.699304 180.7269 7 2 320 328 0.23636181 0.24205833 0.23992010 2 -5.427759 342.5734 10 2 588 596 0.43787211 0.44356910 0.44143250 3 -5.455652 343.7885 11 4 597 605 0.44428067 0.44997266 0.44783791 3 -2.736902 179.8191 12 3 606 614 0.45068406 0.45638108 0.45566966 3 -6.260259 317.6241 14 4 871 879 0.64588391 0.65160582 0.64944792 2 -2.702277 179.0161 15 2 880 888 0.65231762 0.65800995 0.65587518 2 -5.430652 335.7388 18 4 1172 1180 0.86029621 0.86599977 0.86386505 2 -2.694009 179.2497 20 3 1190 1198 0.87312225 0.87881441 0.87810293 2 -6.217848 323.2560 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.158787 1.042859 6.209953e-04 2.4754649 0.0013932768 7.479573 3 1.158503 1.042564 -5.325582e-04 -8.9767870 0.0013813436 22.245573 4 1.158601 1.042944 -7.258801e-04 2.6163569 0.0020357208 3.397093 6 1.156078 1.042080 6.557608e-04 1.5841819 0.0026900251 7.354420 7 1.156153 1.042154 2.867617e-04 3.9726546 0.0015450815 9.530163 10 1.154696 1.042748 1.220068e-04 1.2004645 0.0006563563 4.760720 11 1.154523 1.042577 -4.052118e-04 1.3966272 0.0014616883 4.785163 12 1.154490 1.042784 8.891578e-04 -1.4699848 0.0023027465 2.110122 14 1.156377 1.047213 -7.073193e-04 0.4243599 0.0017357519 3.304151 15 1.156525 1.047330 7.820808e-04 1.7788358 0.0022652427 6.586203 18 1.157509 1.050976 9.955797e-04 0.3806975 0.0022437496 4.332929 20 1.157490 1.051050 -8.714082e-05 2.8673549 0.0011641661 3.830189 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 421.05 co2l1 = 4.465 co2l0 = 0.284" [1] "co2l0 = -165.28 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "22 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "108 out of 1175 1-min values rejected as stack air" [1] "108 out of 1175 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"