[1] "2025-04-30 03:07:51 MDT" [1] "1706" "170723" "d204" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170723a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:07:55 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.953" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.952" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:07:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:07:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:08:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:08:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1382 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:08:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.556 co2off = 420.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.74 minutes" [1] "Shortest Cal: 3.07 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 266 274 0.1903459 0.1960462 0.1939113 3 -5.058009 345.3904 1.174518 3 4 275 283 0.1967580 0.2024629 0.2003210 3 -2.363857 183.8514 1.174508 4 3 284 292 0.2031747 0.2088659 0.2081545 3 -5.879982 318.1631 1.174323 6 4 558 566 0.3983004 0.4040000 0.4018632 2 -2.454089 181.9663 1.170638 7 2 567 575 0.4047113 0.4104032 0.4082681 2 -5.154152 343.1545 1.170739 9 2 845 853 0.6062264 0.6119232 0.6097848 2 -5.207152 340.6208 1.167510 10 4 854 862 0.6126346 0.6183247 0.6161909 2 -2.497670 185.8200 1.167450 14 4 1124 1132 0.8141397 0.8198299 0.8176957 2 -2.531964 191.3123 1.163248 15 2 1133 1141 0.8205413 0.8262368 0.8241029 2 -5.236491 337.5614 1.163301 jfcv2 co2slp o2slp co2sd o2sd 2 1.053792 0.0007645252 3.08475189 0.002012147 6.9251875 3 1.053767 -0.0012567535 -0.01954311 0.003250343 1.1489696 4 1.053783 -0.0023488221 0.71442102 0.005318834 0.7510974 6 1.051162 0.0007959001 0.41404754 0.001831388 4.1036621 7 1.051209 0.0003225774 2.55267389 0.001489047 7.4035940 9 1.048975 -0.0010248206 0.29763549 0.002426218 2.7232163 10 1.048847 0.0005797165 2.14638962 0.002223137 6.1746164 14 1.046025 0.0006995325 0.45777312 0.001748086 11.2317421 15 1.046058 0.0005731599 0.18948750 0.001503654 4.8640343 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.106 co2l1 = 4.497 co2l0 = 0.633" [1] "co2l0 = -168.76 co2l1 = 0.234" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "123 out of 520 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "397 out of 1257 1-min values rejected as stack air" [1] "397 out of 1257 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"