[1] "2025-04-30 03:16:18 MDT"
[1] "1706"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1706/170719.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1706/170720.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1706/170721.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1706/170722.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1706/170723.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1706/170724.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1706/170725.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1706/170726.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1706/170727.html"  
[10] "/net/www/docs/homes/stephens/GO2/1706/170728.html"  
[11] "/net/www/docs/homes/stephens/GO2/1706/170729.html"  
[12] "/net/www/docs/homes/stephens/GO2/1706/170730.html"  
[13] "/net/www/docs/homes/stephens/GO2/1706/170731.html"  
[14] "/net/www/docs/homes/stephens/GO2/1706/170801.html"  
[15] "/net/www/docs/homes/stephens/GO2/1706/170802.html"  
[16] "/net/www/docs/homes/stephens/GO2/1706/170803.html"  
[17] "/net/www/docs/homes/stephens/GO2/1706/170804.html"  
[18] "/net/www/docs/homes/stephens/GO2/1706/170805.html"  
[19] "/net/www/docs/homes/stephens/GO2/1706/170806.html"  
[20] "/net/www/docs/homes/stephens/GO2/1706/170807.html"  
[21] "/net/www/docs/homes/stephens/GO2/1706/lmg_1706.html"
 [1] "/net/www/docs/homes/stephens/GO2/1706/170719.html"
 [2] "/net/www/docs/homes/stephens/GO2/1706/170720.html"
 [3] "/net/www/docs/homes/stephens/GO2/1706/170721.html"
 [4] "/net/www/docs/homes/stephens/GO2/1706/170722.html"
 [5] "/net/www/docs/homes/stephens/GO2/1706/170723.html"
 [6] "/net/www/docs/homes/stephens/GO2/1706/170724.html"
 [7] "/net/www/docs/homes/stephens/GO2/1706/170725.html"
 [8] "/net/www/docs/homes/stephens/GO2/1706/170726.html"
 [9] "/net/www/docs/homes/stephens/GO2/1706/170727.html"
[10] "/net/www/docs/homes/stephens/GO2/1706/170728.html"
[11] "/net/www/docs/homes/stephens/GO2/1706/170729.html"
[12] "/net/www/docs/homes/stephens/GO2/1706/170730.html"
[13] "/net/www/docs/homes/stephens/GO2/1706/170731.html"
[14] "/net/www/docs/homes/stephens/GO2/1706/170801.html"
[15] "/net/www/docs/homes/stephens/GO2/1706/170802.html"
[16] "/net/www/docs/homes/stephens/GO2/1706/170803.html"
[17] "/net/www/docs/homes/stephens/GO2/1706/170804.html"
[18] "/net/www/docs/homes/stephens/GO2/1706/170805.html"
[19] "/net/www/docs/homes/stephens/GO2/1706/170806.html"
[20] "/net/www/docs/homes/stephens/GO2/1706/170807.html"
[1] "170719" "170807"
 [1] "170719" "170720" "170721" "170722" "170723" "170724" "170725" "170726"
 [9] "170727" "170728" "170729" "170730" "170731" "170801" "170802" "170803"
[17] "170804" "170805" "170806" "170807"
[1] "000000" "999999"
[1] "170719_mr_proc.txt, 170719_cal_periods.txt, 170719_cal_param.txt, 241 jogs"
[1] "170720_mr_proc.txt, 170720_cal_periods.txt, 170720_cal_param.txt, 1319 jogs"
[1] "170721_mr_proc.txt, 170721_cal_periods.txt, 170721_cal_param.txt, 1291 jogs"
[1] "170722_mr_proc.txt, 170722_cal_periods.txt, 170722_cal_param.txt, 1125 jogs"
[1] "170723_mr_proc.txt, 170723_cal_periods.txt, 170723_cal_param.txt, 1382 jogs"
[1] "170724_mr_proc.txt, 170724_cal_periods.txt, 170724_cal_param.txt, 1367 jogs"
[1] "170725_mr_proc.txt, 170725_cal_periods.txt, 170725_cal_param.txt, 1388 jogs"
[1] "170726_mr_proc.txt, 170726_cal_periods.txt, 170726_cal_param.txt, 1125 jogs"
[1] "170727_mr_proc.txt, 170727_cal_periods.txt, 170727_cal_param.txt, 1381 jogs"
[1] "170728_mr_proc.txt, 170728_cal_periods.txt, 170728_cal_param.txt, 1395 jogs"
[1] "170729_mr_proc.txt, 170729_cal_periods.txt, 170729_cal_param.txt, 561 jogs"
[1] "170730_mr_proc.txt, 170730_cal_periods.txt, 170730_cal_param.txt, 1287 jogs"
[1] "170731_mr_proc.txt, 170731_cal_periods.txt, 170731_cal_param.txt, 1326 jogs"
[1] "170801_mr_proc.txt, 170801_cal_periods.txt, 170801_cal_param.txt, 1337 jogs"
[1] "170802_mr_proc.txt, 170802_cal_periods.txt, 170802_cal_param.txt, 1029 jogs"
[1] "170803_mr_proc.txt, 170803_cal_periods.txt, 170803_cal_param.txt, 1273 jogs"
[1] "170804_mr_proc.txt, 170804_cal_periods.txt, 170804_cal_param.txt, 1289 jogs"
[1] "170805_mr_proc.txt, 170805_cal_periods.txt, 170805_cal_param.txt, 1216 jogs"
[1] "170806_mr_proc.txt, 170806_cal_periods.txt, 170806_cal_param.txt, 1382 jogs"
[1] "170807_mr_proc.txt, 170807_cal_periods.txt, 170807_cal_param.txt, 1166 jogs"
[1] "170719" "170807" "d200"   "d219"  
[1] "Calculating derived concentration values"
[1] "2025-04-30 03:16:37 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.866, ave o2scale2 = 0.947"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-30 03:16:44 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-30 03:17:05 MDT"
[1] "2025-04-30 03:17:09 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1"
[1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1"
[1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1706 Valve transient for  Line 1 after Cal = -0.21 , -0.08 , 0.02 , 0.01 , 0.01 n = 87"
[1] "1706 Valve transient for  Line 1 after HS = -0.19 , -0.07 , 0.02 , 0.04 , 0.04 n = 28"
[1] "1706 Valve transient for  Line 1 after MS = -0.36 , -0.18 , -0.01 , -0.02 , -0.02 n = 40"
[1] "1706 Valve transient for  Line 1 after LT = 0.82 , 0.62 , 0.28 , 0.08 , 0.1 n = 19"
[1] "1706 Valve transient for  HS after Line 1 = 0.26 , 0.13 , 0 , 0 , -0.01 n = 31"
[1] "1706 Valve transient for  HS after MS = -0.32 , -0.11 , 0.09 , 0.07 , 0.05 n = 1"
[1] "1706 Valve transient for  HS after LS = 1.86 , 0.93 , -0.01 , -0.01 , -0.01 n = 34"
[1] "1706 Valve transient for  MS after Line 1 = 1.62 , 0.81 , 0.02 , 0.03 , 0.02 n = 1"
[1] "1706 Valve transient for  MS after LS = 2.42 , 1.22 , 0.02 , 0 , 0 n = 23"
[1] "1706 Valve transient for  MS after LT = 2.05 , 1.04 , 0.02 , 0.01 , 0.01 n = 10"
[1] "1706 Valve transient for  LS after Line 1 = -1.81 , -0.91 , 0 , 0 , 0 n = 26"
[1] "1706 Valve transient for  LS after HS = -1.89 , -0.95 , 0 , 0 , 0 n = 30"
[1] "1706 Valve transient for  LT after HS = -0.35 , -0.16 , 0.04 , 0.03 , 0.02 n = 10"
[1] "1706 Valve transient for  LT after LS = 0.32 , 0.18 , 0.03 , 0.03 , 0.03 n = 9"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "574 out of 5080 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "4506 out of 20818 1-min values rejected as stack air"
[1] "4506 out of 20818 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1706loxy.d194"
[1] "LMG1706loxy.d195"
[1] "LMG1706loxy.d196"
[1] "LMG1706loxy.d197"
[1] "LMG1706loxy.d200"
[1] "LMG1706loxy.d201"
[1] "LMG1706loxy.d202"
[1] "LMG1706loxy.d204"
[1] "LMG1706loxy.d205"
[1] "LMG1706loxy.d206"
[1] "LMG1706loxy.d210"
[1] "LMG1706loxy.d211"
[1] "LMG1706loxy.d212"
[1] "LMG1706loxy.d213"
[1] "LMG1706loxy.d214"
[1] "LMG1706loxy.d215"
[1] "LMG1706loxy.d216"
[1] "LMG1706loxy.d217"
[1] "LMG1706loxy.d218"
[1] "LMG1706loxy.d219"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 1.8302829
 [2,]  97.5 0.9983361
 [3,] 102.5 2.1630616
 [4,] 107.5 1.9966722
 [5,] 112.5 2.4958403
 [6,] 117.5 1.6638935
 [7,] 122.5 1.6638935
 [8,] 127.5 2.8286190
 [9,] 132.5 1.1647255
[10,] 137.5 1.9966722
[11,] 142.5 1.4975042
[12,] 147.5 1.1647255
[13,] 152.5 0.6655574
[14,] 157.5 0.0000000
[15,] 162.5 0.1663894
[16,] 167.5 0.6655574
[17,] 172.5 0.6655574
[18,] 177.5 0.3327787
[19,] 182.5 0.3327787
[20,] 187.5 0.0000000
[21,] 192.5 0.1663894
[22,] 202.5 0.3327787
[23,] 207.5 0.4991681
[24,] 212.5 0.1663894
[25,] 217.5 0.4991681
[26,] 222.5 0.3327787
[27,] 227.5 0.4991681
[28,] 232.5 0.4991681
[29,] 242.5 0.4991681
[30,] 247.5 0.1663894
[31,] 257.5 0.3327787
[32,] 262.5 0.1663894
[33,] 267.5 0.3327787
[34,] 277.5 0.1663894
[35,] 292.5 0.1663894
[36,] 302.5 0.1663894
[37,] 307.5 0.6655574
[38,] 312.5 0.1663894
[39,] 322.5 0.1663894
[40,] 327.5 0.3327787
[41,] 332.5 0.6655574
[42,] 337.5 0.4991681
[43,] 342.5 0.3327787
[44,] 347.5 0.6655574
[45,] 352.5 0.1663894
[46,] 387.5 0.4991681
[47,] 392.5 0.3327787
[48,] 407.5 0.1663894
[49,] 412.5 0.1663894
[50,] 417.5 1.4975042
[51,] 422.5 1.4975042
[52,] 427.5 1.6638935
[53,] 432.5 1.4975042
[54,] 437.5 2.6622296
[55,] 442.5 1.6638935
[56,] 447.5 2.1630616
       [,1]      [,2]
 [1,]  92.5 1.8302829
 [2,]  97.5 1.6638935
 [3,] 102.5 0.9983361
 [4,] 107.5 0.8319468
 [5,] 112.5 0.6655574
 [6,] 122.5 0.3327787
 [7,] 132.5 0.1663894
 [8,] 172.5 0.1663894
 [9,] 187.5 0.1663894
[10,] 197.5 0.1663894
[11,] 207.5 0.1663894
[12,] 217.5 0.1663894
[13,] 227.5 0.1663894
[14,] 262.5 0.1663894
[15,] 267.5 0.1663894
[16,] 277.5 0.1663894
[17,] 282.5 0.1663894
[18,] 292.5 0.1663894
[19,] 297.5 0.4991681
[20,] 302.5 0.1663894
[21,] 307.5 0.9983361
[22,] 312.5 1.9966722
[23,] 317.5 1.9966722
[24,] 322.5 1.6638935
[25,] 327.5 2.4958403
[26,] 332.5 2.6622296
[27,] 337.5 0.6655574
[28,] 342.5 0.8319468
[29,] 347.5 0.6655574
[30,] 352.5 0.9983361
[31,] 357.5 0.3327787
[32,] 367.5 0.1663894
[33,] 372.5 0.4991681
[34,] 377.5 0.3327787
[35,] 382.5 0.6655574
[36,] 392.5 0.1663894
[37,] 407.5 0.1663894
[38,] 412.5 0.1663894
[39,] 417.5 0.3327787
[40,] 422.5 0.3327787
[41,] 427.5 0.8319468
[42,] 432.5 0.9983361
[43,] 437.5 0.8319468
[44,] 442.5 0.3327787
[45,] 447.5 0.1663894
       [,1]      [,2]
 [1,]  97.5 0.4991681
 [2,] 102.5 1.4975042
 [3,] 107.5 1.3311148
 [4,] 112.5 0.9983361
 [5,] 117.5 0.1663894
 [6,] 122.5 0.1663894
 [7,] 127.5 0.1663894
 [8,] 132.5 0.1663894
 [9,] 147.5 0.1663894
[10,] 167.5 0.1663894
[11,] 197.5 0.0000000
[12,] 307.5 0.1663894
[13,] 312.5 0.8319468
[14,] 317.5 0.6655574
[15,] 322.5 1.1647255
[16,] 327.5 1.4975042
[17,] 332.5 0.1663894
[18,] 362.5 0.3327787
[19,] 367.5 0.1663894
[20,] 382.5 0.1663894
[21,] 402.5 0.3327787
[22,] 417.5 0.6655574
[23,] 422.5 0.6655574
[24,] 427.5 0.3327787
       [,1]      [,2]
 [1,]  92.5 0.3327787
 [2,]  97.5 0.8319468
 [3,] 107.5 1.9966722
 [4,] 112.5 1.1647255
 [5,] 117.5 0.4991681
 [6,] 127.5 0.1663894
 [7,] 137.5 0.1663894
 [8,] 147.5 0.1663894
 [9,] 167.5 0.1663894
[10,] 257.5 0.4991681
[11,] 302.5 0.1663894
[12,] 312.5 0.9983361
[13,] 317.5 1.1647255
[14,] 322.5 0.6655574
[15,] 327.5 0.4991681
[16,] 332.5 0.1663894
[17,] 347.5 0.1663894
[18,] 357.5 0.1663894
[19,] 387.5 0.1663894
[20,] 417.5 0.1663894
[21,] 422.5 0.1663894
[1] "making cruise html"
[1] "2025-04-30 03:17:47 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"