[1] "2017-09-08 10:48:55 MDT"
[1] "1706"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1706/170719.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1706/170720.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1706/170721.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1706/170722.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1706/170723.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1706/170724.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1706/170725.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1706/170726.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1706/170727.html"  
[10] "/net/www/docs/homes/stephens/GO2/1706/170728.html"  
[11] "/net/www/docs/homes/stephens/GO2/1706/170729.html"  
[12] "/net/www/docs/homes/stephens/GO2/1706/170730.html"  
[13] "/net/www/docs/homes/stephens/GO2/1706/170731.html"  
[14] "/net/www/docs/homes/stephens/GO2/1706/170801.html"  
[15] "/net/www/docs/homes/stephens/GO2/1706/170802.html"  
[16] "/net/www/docs/homes/stephens/GO2/1706/170803.html"  
[17] "/net/www/docs/homes/stephens/GO2/1706/170804.html"  
[18] "/net/www/docs/homes/stephens/GO2/1706/170805.html"  
[19] "/net/www/docs/homes/stephens/GO2/1706/170806.html"  
[20] "/net/www/docs/homes/stephens/GO2/1706/170807.html"  
[21] "/net/www/docs/homes/stephens/GO2/1706/lmg_1706.html"
 [1] "/net/www/docs/homes/stephens/GO2/1706/170719.html"
 [2] "/net/www/docs/homes/stephens/GO2/1706/170720.html"
 [3] "/net/www/docs/homes/stephens/GO2/1706/170721.html"
 [4] "/net/www/docs/homes/stephens/GO2/1706/170722.html"
 [5] "/net/www/docs/homes/stephens/GO2/1706/170723.html"
 [6] "/net/www/docs/homes/stephens/GO2/1706/170724.html"
 [7] "/net/www/docs/homes/stephens/GO2/1706/170725.html"
 [8] "/net/www/docs/homes/stephens/GO2/1706/170726.html"
 [9] "/net/www/docs/homes/stephens/GO2/1706/170727.html"
[10] "/net/www/docs/homes/stephens/GO2/1706/170728.html"
[11] "/net/www/docs/homes/stephens/GO2/1706/170729.html"
[12] "/net/www/docs/homes/stephens/GO2/1706/170730.html"
[13] "/net/www/docs/homes/stephens/GO2/1706/170731.html"
[14] "/net/www/docs/homes/stephens/GO2/1706/170801.html"
[15] "/net/www/docs/homes/stephens/GO2/1706/170802.html"
[16] "/net/www/docs/homes/stephens/GO2/1706/170803.html"
[17] "/net/www/docs/homes/stephens/GO2/1706/170804.html"
[18] "/net/www/docs/homes/stephens/GO2/1706/170805.html"
[19] "/net/www/docs/homes/stephens/GO2/1706/170806.html"
[20] "/net/www/docs/homes/stephens/GO2/1706/170807.html"
[1] "170719" "170807"
 [1] "170719" "170720" "170721" "170722" "170723" "170724" "170725" "170726"
 [9] "170727" "170728" "170729" "170730" "170731" "170801" "170802" "170803"
[17] "170804" "170805" "170806" "170807"
[1] "000000" "999999"
[1] "170719_mr_proc.txt, 170719_cal_periods.txt, 170719_cal_param.txt,241jogs"
[1] "170720_mr_proc.txt, 170720_cal_periods.txt, 170720_cal_param.txt,1319jogs"
[1] "170721_mr_proc.txt, 170721_cal_periods.txt, 170721_cal_param.txt,1291jogs"
[1] "170722_mr_proc.txt, 170722_cal_periods.txt, 170722_cal_param.txt,1125jogs"
[1] "170723_mr_proc.txt, 170723_cal_periods.txt, 170723_cal_param.txt,1382jogs"
[1] "170724_mr_proc.txt, 170724_cal_periods.txt, 170724_cal_param.txt,1367jogs"
[1] "170725_mr_proc.txt, 170725_cal_periods.txt, 170725_cal_param.txt,1388jogs"
[1] "170726_mr_proc.txt, 170726_cal_periods.txt, 170726_cal_param.txt,1125jogs"
[1] "170727_mr_proc.txt, 170727_cal_periods.txt, 170727_cal_param.txt,1381jogs"
[1] "170728_mr_proc.txt, 170728_cal_periods.txt, 170728_cal_param.txt,1397jogs"
[1] "170729_mr_proc.txt, 170729_cal_periods.txt, 170729_cal_param.txt,561jogs"
[1] "170730_mr_proc.txt, 170730_cal_periods.txt, 170730_cal_param.txt,1287jogs"
[1] "170731_mr_proc.txt, 170731_cal_periods.txt, 170731_cal_param.txt,1326jogs"
[1] "170801_mr_proc.txt, 170801_cal_periods.txt, 170801_cal_param.txt,1337jogs"
[1] "170802_mr_proc.txt, 170802_cal_periods.txt, 170802_cal_param.txt,1029jogs"
[1] "170803_mr_proc.txt, 170803_cal_periods.txt, 170803_cal_param.txt,1273jogs"
[1] "170804_mr_proc.txt, 170804_cal_periods.txt, 170804_cal_param.txt,1289jogs"
[1] "170805_mr_proc.txt, 170805_cal_periods.txt, 170805_cal_param.txt,1219jogs"
[1] "170806_mr_proc.txt, 170806_cal_periods.txt, 170806_cal_param.txt,1383jogs"
[1] "170807_mr_proc.txt, 170807_cal_periods.txt, 170807_cal_param.txt,1167jogs"
[1] "170719" "170807" "d200"   "d219"  
[1] "Calculating derived concentration values"
[1] "2017-09-08 10:49:39 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.866, ave o2scale2 = 0.947"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-09-08 10:50:00 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-09-08 10:50:34 MDT"
[1] "2017-09-08 10:50:41 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 428 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 396.67 O2 = -502.1"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CC339490 description: LS CO2 = 408.84 O2 = -707.8"
[1] "position 4 cylinder CB08905 description: LT CO2 = 404.14 O2 = -661.5"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1706 Valve transient for  Line 1 after Cal = -0.2 , -0.08 , 0.02 , 0.02 , 0.01 n = 74"
[1] "1706 Valve transient for  Line 1 after HS = -0.17 , -0.07 , 0.04 , 0.05 , 0.05 n = 24"
[1] "1706 Valve transient for  Line 1 after MS = -0.32 , -0.16 , 0 , -0.01 , 0 n = 35"
[1] "1706 Valve transient for  Line 1 after LT = 0.72 , 0.52 , 0.26 , 0.05 , 0.08 n = 15"
[1] "1706 Valve transient for  HS after Line 1 = 0.26 , 0.12 , 0 , 0 , -0.01 n = 25"
[1] "1706 Valve transient for  HS after MS = -0.32 , -0.11 , 0.09 , 0.07 , 0.05 n = 1"
[1] "1706 Valve transient for  HS after LS = 1.85 , 0.92 , -0.01 , -0.01 , -0.01 n = 30"
[1] "1706 Valve transient for  MS after Line 1 = 1.61 , 0.81 , 0.02 , 0.03 , 0.02 n = 1"
[1] "1706 Valve transient for  MS after LS = 2.4 , 1.2 , 0.02 , 0.01 , 0 n = 19"
[1] "1706 Valve transient for  MS after LT = 2.04 , 1.03 , 0.02 , 0 , 0 n = 9"
[1] "1706 Valve transient for  LS after Line 1 = -1.81 , -0.9 , 0 , -0.01 , 0 n = 23"
[1] "1706 Valve transient for  LS after HS = -1.89 , -0.95 , 0 , 0 , 0 n = 27"
[1] "1706 Valve transient for  LT after HS = -0.35 , -0.16 , 0.04 , 0.03 , 0.02 n = 8"
[1] "1706 Valve transient for  LT after LS = 0.31 , 0.17 , 0.03 , 0.03 , 0.02 n = 8"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "587 out of 5030 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "4443 out of 20821 1-min values rejected as stack air"
[1] "4443 out of 20821 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1706loxy.d194"
[1] "LMG1706loxy.d195"
[1] "LMG1706loxy.d196"
[1] "LMG1706loxy.d197"
[1] "LMG1706loxy.d200"
[1] "LMG1706loxy.d201"
[1] "LMG1706loxy.d202"
[1] "LMG1706loxy.d204"
[1] "LMG1706loxy.d205"
[1] "LMG1706loxy.d206"
[1] "LMG1706loxy.d210"
[1] "LMG1706loxy.d211"
[1] "LMG1706loxy.d212"
[1] "LMG1706loxy.d213"
[1] "LMG1706loxy.d214"
[1] "LMG1706loxy.d215"
[1] "LMG1706loxy.d216"
[1] "LMG1706loxy.d217"
[1] "LMG1706loxy.d218"
[1] "LMG1706loxy.d219"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 1.8333333
 [2,]  97.5 1.0000000
 [3,] 102.5 2.3333333
 [4,] 107.5 1.6666667
 [5,] 112.5 2.3333333
 [6,] 117.5 1.6666667
 [7,] 122.5 1.6666667
 [8,] 127.5 2.6666667
 [9,] 132.5 1.1666667
[10,] 137.5 2.1666667
[11,] 142.5 1.5000000
[12,] 147.5 1.1666667
[13,] 152.5 0.5000000
[14,] 157.5 0.0000000
[15,] 162.5 0.3333333
[16,] 167.5 0.3333333
[17,] 172.5 0.6666667
[18,] 177.5 0.3333333
[19,] 182.5 0.3333333
[20,] 187.5 0.0000000
[21,] 192.5 0.1666667
[22,] 202.5 0.3333333
[23,] 207.5 0.5000000
[24,] 212.5 0.1666667
[25,] 217.5 0.3333333
[26,] 222.5 0.5000000
[27,] 227.5 0.5000000
[28,] 232.5 0.5000000
[29,] 242.5 0.5000000
[30,] 247.5 0.1666667
[31,] 257.5 0.3333333
[32,] 262.5 0.1666667
[33,] 267.5 0.3333333
[34,] 272.5 0.1666667
[35,] 277.5 0.3333333
[36,] 292.5 0.1666667
[37,] 297.5 0.1666667
[38,] 307.5 0.6666667
[39,] 312.5 0.1666667
[40,] 322.5 0.1666667
[41,] 327.5 0.3333333
[42,] 332.5 0.6666667
[43,] 337.5 0.5000000
[44,] 342.5 0.3333333
[45,] 347.5 0.6666667
[46,] 352.5 0.1666667
[47,] 387.5 0.5000000
[48,] 392.5 0.3333333
[49,] 407.5 0.1666667
[50,] 412.5 0.1666667
[51,] 417.5 1.5000000
[52,] 422.5 1.5000000
[53,] 427.5 1.6666667
[54,] 432.5 1.5000000
[55,] 437.5 2.6666667
[56,] 442.5 1.6666667
[57,] 447.5 2.1666667
       [,1]      [,2]
 [1,]  92.5 1.8333333
 [2,]  97.5 1.6666667
 [3,] 102.5 1.0000000
 [4,] 107.5 0.8333333
 [5,] 112.5 0.6666667
 [6,] 122.5 0.5000000
 [7,] 132.5 0.1666667
 [8,] 172.5 0.1666667
 [9,] 182.5 0.1666667
[10,] 197.5 0.1666667
[11,] 207.5 0.1666667
[12,] 217.5 0.1666667
[13,] 227.5 0.1666667
[14,] 262.5 0.1666667
[15,] 267.5 0.1666667
[16,] 277.5 0.1666667
[17,] 282.5 0.1666667
[18,] 292.5 0.1666667
[19,] 297.5 0.5000000
[20,] 302.5 0.1666667
[21,] 307.5 1.0000000
[22,] 312.5 2.0000000
[23,] 317.5 2.0000000
[24,] 322.5 1.6666667
[25,] 327.5 2.5000000
[26,] 332.5 2.6666667
[27,] 337.5 0.6666667
[28,] 342.5 0.8333333
[29,] 347.5 0.6666667
[30,] 352.5 1.0000000
[31,] 357.5 0.3333333
[32,] 367.5 0.1666667
[33,] 372.5 0.5000000
[34,] 377.5 0.3333333
[35,] 382.5 0.6666667
[36,] 392.5 0.1666667
[37,] 407.5 0.1666667
[38,] 412.5 0.1666667
[39,] 417.5 0.3333333
[40,] 422.5 0.3333333
[41,] 427.5 0.8333333
[42,] 432.5 1.0000000
[43,] 437.5 0.8333333
[44,] 442.5 0.3333333
[45,] 447.5 0.1666667
       [,1]      [,2]
 [1,]  97.5 0.5000000
 [2,] 102.5 1.5000000
 [3,] 107.5 1.3333333
 [4,] 112.5 1.0000000
 [5,] 117.5 0.1666667
 [6,] 122.5 0.1666667
 [7,] 127.5 0.1666667
 [8,] 132.5 0.1666667
 [9,] 147.5 0.1666667
[10,] 167.5 0.1666667
[11,] 177.5 0.0000000
[12,] 307.5 0.1666667
[13,] 312.5 0.8333333
[14,] 317.5 0.6666667
[15,] 322.5 1.1666667
[16,] 327.5 1.5000000
[17,] 332.5 0.1666667
[18,] 362.5 0.3333333
[19,] 367.5 0.1666667
[20,] 382.5 0.1666667
[21,] 402.5 0.3333333
[22,] 417.5 0.6666667
[23,] 422.5 0.6666667
[24,] 427.5 0.3333333
       [,1]      [,2]
 [1,]  92.5 0.3333333
 [2,]  97.5 0.8333333
 [3,] 107.5 2.0000000
 [4,] 112.5 1.1666667
 [5,] 117.5 0.5000000
 [6,] 127.5 0.1666667
 [7,] 137.5 0.1666667
 [8,] 147.5 0.1666667
 [9,] 167.5 0.1666667
[10,] 257.5 0.5000000
[11,] 302.5 0.1666667
[12,] 312.5 1.0000000
[13,] 317.5 1.1666667
[14,] 322.5 0.6666667
[15,] 327.5 0.5000000
[16,] 332.5 0.1666667
[17,] 347.5 0.1666667
[18,] 357.5 0.1666667
[19,] 387.5 0.1666667
[20,] 417.5 0.1666667
[21,] 422.5 0.1666667
[1] "making cruise html"
[1] "2017-09-08 10:51:28 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"