[1] "2025-04-30 03:02:21 MDT" [1] "1704" "170526" "d146" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170526a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:02:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.89" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.89" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:02:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:02:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:02:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:02:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1393 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:02:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.498 co2off = 375.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.001836574 0.007525434 0.00539213 1 5.998089 337.4290 3 2 281 289 0.203312558 0.209002488 0.20686831 3 6.003634 337.4286 4 4 290 298 0.209713686 0.215409838 0.21327510 3 8.710929 168.5171 5 3 299 307 0.216121296 0.221813108 0.22110031 3 5.207241 322.0262 7 4 571 578 0.411231250 0.416924653 0.41514549 2 8.688247 179.0203 8 2 579 587 0.417636053 0.423343779 0.42119872 2 5.975938 335.7315 11 2 859 867 0.619221499 0.624923495 0.62278741 3 6.008384 335.2378 12 4 868 876 0.625635590 0.631327807 0.62919300 3 8.720875 168.7834 13 3 877 885 0.632048351 0.637739757 0.63702840 3 5.261634 318.6900 15 4 1151 1159 0.827169502 0.832873206 0.83073169 2 8.715536 169.4584 16 2 1160 1168 0.833584954 0.839276215 0.83714176 2 6.003187 332.2869 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.165489 1.118757 -0.0001090739 4.16104981 0.002635361 9.6131586 3 1.165730 1.118899 -0.0015558926 2.45173943 0.004081435 5.4763721 4 1.165648 1.118737 0.0010846458 -0.02858149 0.002776489 1.6013962 5 1.165866 1.119101 -0.0004922426 0.07391865 0.001804374 0.1730906 7 1.167436 1.120461 0.0002007652 -0.74139777 0.001813696 2.3627603 8 1.167664 1.120632 0.0017923243 2.37199702 0.004335236 5.3568197 11 1.172629 1.125729 -0.0005455000 1.85635449 0.002037547 5.4489828 12 1.172758 1.125775 0.0036249759 1.95395617 0.008875587 5.9198368 13 1.173034 1.126201 -0.0039808239 4.60594993 0.009137864 4.7790018 15 1.176833 1.129748 0.0018646813 2.73873516 0.006291100 6.7196809 16 1.177163 1.130000 0.0002527472 1.27291142 0.005203289 3.1308034 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 369.869 co2l1 = 4.498 co2l0 = -1.818" [1] "co2l0 = -162.64 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "87 out of 700 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "613 out of 1236 1-min values rejected as stack air" [1] "613 out of 1236 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"