[1] "2025-04-30 03:01:05 MDT" [1] "1704" "170524" "d144" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170524a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:01:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.873, ave o2scale2 = 0.909" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "36 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.873, ave o2scale2 = 0.909" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "38 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:01:09 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:01:09 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:01:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:01:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 38 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1366 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:01:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.459 co2off = 367.73 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.05 minutes" [1] "Shortest Cal: 6.16 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 172 180 0.1237877 0.1294800 0.1273447 3 6.000616 338.5531 1.144450 3 4 181 189 0.1301916 0.1358898 0.1337552 3 8.731830 170.6835 1.144450 4 3 190 198 0.1366012 0.1423015 0.1415840 3 5.188705 317.8351 1.144509 6 4 464 472 0.3316669 0.3373581 0.3352235 2 8.738821 175.7530 1.144308 7 2 473 481 0.3380696 0.3437678 0.3416300 2 6.001277 339.1503 1.144444 9 2 751 756 0.5395366 0.5438146 0.5427473 3 6.012641 337.9233 1.143536 10 4 757 765 0.5459490 0.5516415 0.5495052 3 8.751045 170.1794 1.143899 12 3 775 783 0.5587605 0.5644592 0.5637482 3 5.215509 318.0451 1.144808 14 4 1018 1026 0.7474136 0.7531078 0.7509716 2 8.729616 169.7626 1.146598 15 2 1027 1035 0.7538192 0.7595080 0.7573747 2 5.992536 336.3171 1.146635 17 2 1306 1314 0.9552714 0.9609619 0.9588275 3 6.015268 335.3274 1.147189 18 4 1315 1323 0.9616791 0.9673687 0.9652350 3 8.744545 167.7774 1.147231 19 3 1324 1332 0.9680800 0.9737817 0.9730707 3 5.200411 316.4710 1.147389 jfcv2 co2slp o2slp co2sd o2sd 2 1.100135 3.789764e-04 3.26701246 0.0013902697 7.3158028 3 1.100035 -5.486961e-04 2.09302744 0.0018724685 5.3839922 4 1.100205 -4.196989e-06 -0.43200882 0.0004234566 0.7422198 6 1.099243 7.124158e-04 3.55777619 0.0019968819 8.2494355 7 1.099269 8.674932e-04 1.76900567 0.0024743100 4.0643487 9 1.097823 9.821551e-04 -1.14415344 0.0013271749 3.0337803 10 1.098189 -2.247955e-04 2.80549674 0.0027884888 8.0849660 12 1.099039 -4.497320e-04 4.07265060 0.0019952511 4.2481699 14 1.100693 -1.503892e-04 0.79960476 0.0017833243 2.8849681 15 1.100617 -1.569253e-04 0.43525881 0.0010211673 2.2697237 17 1.101000 -1.655600e-04 1.38610255 0.0017349480 3.4138970 18 1.100946 6.516654e-04 0.00390431 0.0017439308 2.3087488 19 1.101253 -7.729981e-04 2.31524878 0.0018027240 2.4860835 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 370.178 co2l1 = 4.446 co2l0 = 0.476" [1] "co2l0 = -162.48 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "58 out of 370 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "312 out of 1201 1-min values rejected as stack air" [1] "312 out of 1201 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"