[1] "2025-04-30 03:00:32 MDT" [1] "1704" "170523" "d143" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170523a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:00:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.913" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.913" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:00:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:00:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:00:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:00:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1400 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:01:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.441 co2off = 370.1 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 118 126 0.08425437 0.08994520 0.08781083 2 8.841402 171.9359 3 2 127 135 0.09065663 0.09635448 0.09422073 2 6.093366 337.7670 5 2 410 418 0.29213516 0.29782584 0.29569172 3 6.065589 334.6141 6 4 419 427 0.29853730 0.30424054 0.30210096 3 8.815652 172.2941 8 3 437 445 0.31135437 0.31705067 0.31633960 3 5.258982 316.9882 10 4 699 707 0.50004086 0.50574117 0.50360692 2 8.794071 174.9881 11 2 708 716 0.50645281 0.51215671 0.51001208 2 6.035107 335.4126 13 2 991 999 0.70797384 0.71367405 0.71153550 3 6.010018 337.9317 14 4 1000 1008 0.71438542 0.72007639 0.71794198 3 8.750089 170.3486 15 3 1009 1017 0.72078796 0.72648490 0.72577386 3 5.209054 318.6185 17 4 1283 1291 0.91586380 0.92155955 0.91942092 2 8.740580 168.0783 18 2 1292 1300 0.92227240 0.92796224 0.92582854 2 6.005268 339.3031 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.133270 1.091361 9.935373e-04 -1.0783425 0.0025353894 4.991579 3 1.133318 1.091307 1.115874e-03 1.1334994 0.0027052294 5.400250 5 1.135151 1.092828 1.568812e-04 0.7220911 0.0009380950 1.924010 6 1.135174 1.092758 -8.942963e-05 1.9432670 0.0009580098 5.388723 8 1.135478 1.092945 -1.458116e-03 2.1377184 0.0033347746 2.271284 10 1.137618 1.094903 1.159060e-03 2.1888523 0.0032676660 5.004352 11 1.137986 1.095194 -2.480653e-03 2.9400244 0.0055258288 6.783560 13 1.140742 1.097500 1.982570e-04 2.2048789 0.0009958993 5.820743 14 1.140808 1.097488 7.560283e-04 1.5282558 0.0019940854 4.365817 15 1.140892 1.097705 3.749129e-04 -3.9380227 0.0020531444 4.098360 17 1.143168 1.099569 -1.698908e-04 2.2592901 0.0006767284 5.807570 18 1.143443 1.099766 2.310205e-04 2.0405698 0.0011049806 5.235144 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 370.086 co2l1 = 4.432 co2l0 = -0.081" [1] "co2l0 = -162.89 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "211 out of 920 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "709 out of 1222 1-min values rejected as stack air" [1] "709 out of 1222 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"