[1] "2025-04-30 03:00:01 MDT" [1] "1704" "170522" "d142" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170522a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 03:00:05 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.914" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "145 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.914" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "145 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 03:00:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 03:00:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 03:00:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 03:00:24 MDT" [1] "reading in recalculated plot titles" [1] "Removed 145 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1258 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 03:00:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.424 co2off = 367.64 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 6.84 minutes" [1] "Shortest Cal: 3.08 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 35 39 0.04461481 0.05030547 0.04959401 3 6.037938 330.1515 3 4 40 48 0.05101675 0.05671195 0.05457885 3 8.768045 171.3217 5 3 55 63 0.06383365 0.06952384 0.06881248 3 5.231375 317.8445 7 4 295 298 0.25328073 0.25541701 0.25506000 2 8.813750 163.9649 8 2 299 306 0.25897523 0.26396719 0.26218527 2 6.062958 338.4214 10 2 542 546 0.46332957 0.46617705 0.46546570 3 6.116417 343.3156 11 4 547 552 0.46831128 0.47187448 0.47080250 3 8.864938 170.7975 12 3 553 558 0.47401123 0.47756736 0.47863558 3 5.303875 295.0888 14 4 799 807 0.66842433 0.67412590 0.67198752 2 8.821482 169.9600 15 2 808 815 0.67554881 0.68053035 0.67875033 2 6.060781 336.9468 18 2 1085 1093 0.87634751 0.88205498 0.87990715 3 6.120589 335.4669 19 4 1094 1102 0.88276629 0.88845593 0.88632195 3 8.855089 166.7353 20 3 1103 1111 0.88916742 0.89486548 0.89415434 3 5.285732 316.9277 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.144859 1.104030 -1.037078e-03 1.9919690 0.0010843345 2.0408137 3 1.144790 1.103793 -6.975719e-05 2.1518135 0.0023749217 5.2368314 5 1.145389 1.104312 -1.272717e-03 -2.8142279 0.0028695601 3.0043049 7 1.139921 1.098408 -7.294242e-04 3.3374479 0.0005303301 2.4265018 8 1.140026 1.098502 -1.032086e-03 2.8073050 0.0020131081 5.4298279 10 1.134266 1.092660 1.311768e-03 2.7869595 0.0013640664 2.8617468 11 1.133835 1.092106 8.400734e-04 -2.7945443 0.0012258076 4.8403964 12 1.133843 1.092150 -2.685233e-04 -5.6721117 0.0003679900 12.3390242 14 1.132497 1.090941 -1.480064e-03 1.9839685 0.0034325180 5.5076175 15 1.132121 1.090418 1.649906e-03 2.8727557 0.0033920288 6.6840182 18 1.131838 1.090246 9.963218e-05 1.9079723 0.0022525614 4.6920023 19 1.131755 1.090120 -2.517198e-03 1.5267154 0.0058714370 4.0126572 20 1.131786 1.090300 -8.696660e-04 -0.6308539 0.0019884806 0.6526788 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 369.988 co2l1 = 4.424 co2l0 = 1.151" [1] "co2l0 = -161.64 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "111 out of 945 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "834 out of 1090 1-min values rejected as stack air" [1] "834 out of 1090 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"