[1] "2025-04-30 02:56:36 MDT" [1] "1704" "170516" "d136" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170516a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:56:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.871, ave o2scale2 = 0.898" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.871, ave o2scale2 = 0.898" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:56:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:56:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:57:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:57:02 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:57:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.489 co2off = 371.03 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 19 27 0.01364517 0.01933898 0.01720390 2 8.446955 167.6816 3 2 28 36 0.02005064 0.02575304 0.02361665 2 5.710607 333.9566 5 2 311 319 0.22154427 0.22723921 0.22510533 3 5.730438 334.7009 6 4 320 328 0.22795058 0.23364760 0.23150938 3 8.460643 169.6142 7 3 329 337 0.23435940 0.24004815 0.23933704 3 4.931152 319.7711 9 4 603 611 0.42947202 0.43517396 0.43303716 2 8.485036 170.7336 10 2 612 620 0.43588547 0.44157483 0.43944124 2 5.757384 336.1473 13 2 895 903 0.63742005 0.64311942 0.64097925 3 5.769795 337.2943 14 4 904 912 0.64383079 0.64952092 0.64738699 3 8.499089 166.0791 15 3 913 921 0.65023258 0.65593258 0.65522143 3 4.970589 320.2444 17 4 1187 1195 0.84530058 0.85099181 0.84885719 2 8.527741 173.2084 18 2 1196 1204 0.85170391 0.85740234 0.85526904 2 5.806902 336.9521 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.145064 1.111243 -0.0005598165 0.9173448 0.0014387288 4.9661962 3 1.145032 1.111087 0.0003803646 0.6909880 0.0010745119 2.6453261 5 1.150108 1.116157 0.0004358577 1.4528589 0.0012049161 3.6381747 6 1.150221 1.116191 0.0017371849 1.9410567 0.0039129050 4.8162795 7 1.150549 1.116669 -0.0003509698 -1.0663187 0.0022322381 1.9442312 9 1.149491 1.115085 0.0018366651 1.5382452 0.0041257665 4.8423036 10 1.149530 1.115026 -0.0003509184 0.9137763 0.0015610112 3.1173505 13 1.148169 1.113608 -0.0005457051 2.0575323 0.0013667910 5.4438767 14 1.147978 1.113324 -0.0001220476 1.1665696 0.0006433323 4.0490361 15 1.147816 1.113290 -0.0005576639 0.5705529 0.0017805580 0.6367934 17 1.147561 1.112843 0.0014466270 2.4287484 0.0035024970 5.6201717 18 1.147750 1.112945 0.0020076065 4.3461037 0.0044954921 9.9504277 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.199 co2l1 = 4.46 co2l0 = 0.129" [1] "co2l0 = -162.13 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "132 out of 295 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "163 out of 1234 1-min values rejected as stack air" [1] "163 out of 1234 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"