[1] "2025-04-30 02:56:07 MDT" [1] "1704" "170515" "d135" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170515a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84180 63 [1] 84180 [1] 84180 [1] "testing skipping spike filter" [1] 84180 [1] 84180 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:56:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.9" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "133 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.9" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "136 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:56:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:56:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:56:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:56:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 136 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1266 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:56:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.464 co2off = 371.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 7.7 minutes" [1] "Shortest Cal: 4.1 minutes" [1] "Longest Cal: 8.24 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 159 165 0.1812738 0.1869758 0.1852678 2 8.480000 171.1220 1.145872 3 2 166 172 0.1891100 0.1933915 0.1919609 2 5.752325 338.3672 1.146095 6 2 412 420 0.3892888 0.3950080 0.3928635 3 5.760813 333.3621 1.143943 7 4 421 429 0.3957221 0.4014245 0.3992884 3 8.497902 171.1784 1.143839 8 3 430 438 0.4021371 0.4078399 0.4071265 3 4.955839 318.8698 1.144009 10 4 704 712 0.5974717 0.6031735 0.6010332 2 8.500134 170.7624 1.143116 11 2 713 721 0.6038857 0.6095799 0.6074442 2 5.771036 334.0491 1.142992 13 2 996 1004 0.8055516 0.8112481 0.8091117 3 5.811491 334.2883 1.143229 14 4 1005 1013 0.8119654 0.8176653 0.8155295 3 8.567848 170.0026 1.143200 16 3 1023 1031 0.8247943 0.8304892 0.8297774 3 5.000063 316.0276 1.143358 jfcv2 co2slp o2slp co2sd o2sd 2 1.112548 0.0013438194 2.152246 0.003274845 5.944847 3 1.112666 0.0015365960 2.013657 0.002657316 3.574926 6 1.110545 0.0006736736 1.472572 0.001731299 4.051389 7 1.110362 -0.0006198925 1.165436 0.002106802 5.206691 8 1.110696 0.0011766483 1.128455 0.003291375 1.275803 10 1.109666 0.0010389312 2.001273 0.002353916 4.840886 11 1.109432 0.0018510359 1.907479 0.004436892 4.552000 13 1.109742 0.0041119089 1.655262 0.009168875 3.883736 14 1.109671 0.0015328410 2.091164 0.004697747 5.735473 16 1.109793 -0.0048734255 2.094756 0.010934226 2.185668 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.214 co2l1 = 4.444 co2l0 = 0.329" [1] "co2l0 = -162.87 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "126 out of 535 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "409 out of 1119 1-min values rejected as stack air" [1] "409 out of 1119 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"