[1] "2025-04-30 02:55:04 MDT" [1] "1704" "170513" "d133" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170513a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83919 63 [1] 83919 [1] 83919 [1] "testing skipping spike filter" [1] 83919 [1] 83919 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:55:08 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.881" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.881" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:55:09 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:55:09 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:55:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:55:30 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1397 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:55:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.515 co2off = 371.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 143 151 0.1020073 0.1076973 0.1055631 2 8.365991 166.8255 1.162929 3 2 152 160 0.1084087 0.1141078 0.1119691 2 5.665357 335.3998 1.163031 5 2 435 443 0.3098857 0.3155875 0.3134515 3 5.636607 333.5755 1.166268 6 4 444 452 0.3162990 0.3219885 0.3198549 3 8.338536 170.6137 1.166245 8 3 462 470 0.3291112 0.3348101 0.3340988 3 4.836929 315.3861 1.166577 10 4 721 729 0.5179635 0.5236654 0.5215250 2 8.316277 171.5389 1.167594 11 2 730 738 0.5243770 0.5300668 0.5279332 2 5.609518 333.4620 1.167730 13 2 1013 1021 0.7258673 0.7315578 0.7294236 3 5.638786 334.9208 1.167934 14 4 1022 1030 0.7322736 0.7379659 0.7358314 3 8.343821 170.6675 1.167993 15 3 1031 1039 0.7386771 0.7443753 0.7436641 3 4.844268 314.1845 1.168071 17 4 1305 1313 0.9337647 0.9394564 0.9373218 2 8.310991 170.3652 1.168299 18 2 1314 1322 0.9401678 0.9458601 0.9437261 2 5.604768 333.3092 1.168389 jfcv2 co2slp o2slp co2sd o2sd 2 1.132384 0.0004750539 0.4721701 0.0011678353 1.816574 3 1.132547 0.0011428783 2.4431058 0.0033522991 5.870631 5 1.135413 0.0006179277 1.1311400 0.0015822561 4.141510 6 1.135467 0.0004097600 2.5767821 0.0010038060 5.852145 8 1.135880 -0.0002152431 -2.0453269 0.0009031402 2.101405 10 1.136424 -0.0009210978 2.5910152 0.0024850745 5.954181 11 1.136458 0.0001547518 0.5315846 0.0006601711 3.809521 13 1.136391 -0.0004946463 1.8954128 0.0011691884 4.403381 14 1.136365 0.0013049409 3.0548911 0.0030208539 6.933437 15 1.136574 -0.0006363084 -1.4267180 0.0026823386 1.486775 17 1.136390 0.0013615241 2.2585824 0.0031955431 5.748117 18 1.136389 -0.0014056613 2.7683029 0.0037330719 6.303559 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.535 co2l1 = 4.499 co2l0 = 0.302" [1] "co2l0 = -162.89 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "229 out of 629 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "400 out of 1219 1-min values rejected as stack air" [1] "400 out of 1219 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"