[1] "2025-04-30 02:54:32 MDT" [1] "1704" "170512" "d132" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170512a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:54:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.891" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.891" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:54:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:54:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:54:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:54:57 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:54:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.481 co2off = 371.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 87 95 0.06245035 0.06814549 0.06600949 3 5.689839 335.6667 3 4 96 104 0.06885764 0.07456256 0.07242279 3 8.427982 169.7258 5 3 114 122 0.08168119 0.08738426 0.08667259 3 4.908375 316.7122 7 4 379 387 0.27037361 0.27607312 0.27393783 2 8.410429 168.1489 8 2 388 396 0.27678438 0.28248056 0.28034125 2 5.684607 333.0191 10 2 671 679 0.47826128 0.48396253 0.48182253 3 5.672509 336.9075 11 4 680 688 0.48467428 0.49036632 0.48823211 3 8.388437 152.5749 12 3 689 697 0.49107798 0.49677604 0.49606485 3 4.877107 314.2249 14 4 963 971 0.68618481 0.69187795 0.68974151 2 8.403527 169.6237 15 2 972 980 0.69260211 0.69829253 0.69615812 2 5.680170 333.5849 18 2 1255 1263 0.89408802 0.89977928 0.89764521 3 5.675393 332.7127 19 4 1264 1272 0.90049149 0.90619537 0.90405925 3 8.384250 171.1662 20 3 1273 1281 0.90690692 0.91259936 0.91188607 3 4.873009 316.4266 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.142306 1.113549 2.068690e-04 2.26712917 0.0020032061 5.80590589 3 1.142335 1.113649 1.396006e-03 1.78980203 0.0033151943 4.28431757 5 1.142708 1.114098 -3.289079e-04 0.03208192 0.0012551975 0.09230492 7 1.146865 1.117711 1.780505e-05 1.65122087 0.0009590771 4.50239092 8 1.147013 1.117907 -9.782952e-04 0.71062769 0.0026765071 2.94931660 10 1.151838 1.122262 -2.800399e-04 3.44313696 0.0009878352 8.20343584 11 1.151782 1.122443 1.107012e-03 9.64841013 0.0026565564 26.44423979 12 1.152087 1.122572 -1.048188e-04 0.48946418 0.0016071594 0.51163382 14 1.156105 1.126309 -5.163142e-04 0.57693425 0.0014219527 3.09788330 15 1.156262 1.126533 -1.041582e-03 2.00797766 0.0024067814 4.59774647 18 1.160193 1.130035 6.079421e-04 1.74276818 0.0017856176 5.13123332 19 1.160184 1.130081 -2.407431e-04 1.82149922 0.0009729412 4.96155445 20 1.160369 1.130094 -6.164239e-04 -1.39048345 0.0020976886 1.43775504 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.451 co2l1 = 4.473 co2l0 = -0.235" [1] "co2l0 = -161.24 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "57 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "58 out of 1211 1-min values rejected as stack air" [1] "58 out of 1211 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"