[1] "2025-04-30 02:53:59 MDT" [1] "1704" "170511" "d131" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170511a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84180 63 [1] 84180 [1] 84180 [1] "testing skipping spike filter" [1] 84180 [1] 84180 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:54:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.9" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.9" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "12 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:54:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:54:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:54:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:54:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 12 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1390 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:54:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.468 co2off = 371.52 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 8.05 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 28 35 0.02257815 0.02755966 0.02578010 2 8.439875 167.9309 3 2 36 43 0.02827147 0.03326105 0.03147628 2 5.702177 325.9804 5 2 320 328 0.23054502 0.23624479 0.23410963 3 5.653607 333.6114 6 4 329 337 0.23695628 0.24265593 0.24051437 3 8.392786 170.8834 7 3 338 346 0.24336753 0.24905738 0.24834612 3 4.870116 317.9114 9 4 605 613 0.43851499 0.44421947 0.44207891 2 8.423188 169.8699 10 2 614 622 0.44493131 0.45062271 0.44848848 2 5.692232 334.1399 13 2 894 902 0.64661476 0.65231646 0.65017310 3 5.702491 336.6792 14 4 903 911 0.65302784 0.65871913 0.65658471 3 8.427000 167.2870 15 3 912 920 0.65943073 0.66513197 0.66442056 3 4.882964 318.0349 17 4 1186 1194 0.85451484 0.86020619 0.85807165 2 8.425580 169.9957 18 2 1195 1203 0.86091768 0.86661687 0.86448270 2 5.692545 334.4097 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.132542 1.112021 -1.081572e-04 3.2371421 0.0012405896 7.146439 3 1.132737 1.112105 9.599029e-05 3.3063276 0.0005309435 7.686075 5 1.136795 1.113006 1.613962e-03 1.9399867 0.0036244098 4.328494 6 1.136787 1.113011 3.290325e-05 2.5992583 0.0012193413 7.191034 7 1.137018 1.113013 -1.259634e-03 0.3539615 0.0028632979 1.463022 9 1.137138 1.111400 -2.215081e-04 1.3928444 0.0017459029 6.775004 10 1.137047 1.111326 1.529446e-03 1.8789145 0.0036235116 4.518566 13 1.137336 1.110297 -8.065902e-04 2.2384405 0.0019926390 5.081719 14 1.137194 1.110195 -7.494957e-04 2.7881894 0.0017470213 6.781592 15 1.137423 1.110221 -1.866421e-03 -5.8972542 0.0051184991 6.077726 17 1.138920 1.110948 4.788760e-05 2.3353657 0.0014955291 5.619078 18 1.138945 1.111024 9.390671e-04 1.5573541 0.0023617267 3.718302 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.537 co2l1 = 4.453 co2l0 = 0.143" [1] "co2l0 = -162.7 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "165 out of 420 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "255 out of 1223 1-min values rejected as stack air" [1] "255 out of 1223 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"