[1] "2025-04-30 02:49:13 MDT" [1] "1704" "170429" "d119" Read 4 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170429a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 46320 63 [1] 46320 [1] 46320 [1] "testing skipping spike filter" [1] 46320 [1] 46320 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:49:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.396, ave o2scale2 = 0.888" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "99 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.396, ave o2scale2 = 0.888" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "100 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:49:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:49:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:49:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:49:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 100 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 41 manually filtered row(s) from a screenall period" [1] "Removed 30 manually filtered row(s) from a screenall period" [1] "Removed 27 manually filtered row(s) from a screenall period" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 571 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:49:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.48 co2off = 367.49 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.51 minutes" [1] "Average Cal: 8.03 minutes" [1] "Shortest Cal: 6.15 minutes" [1] "Longest Cal: 10.25 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 1 3 1 6 0.4496713 0.4544015 0.4547975 3 4.415047 325.5377 0.7210027 2 2 7 11 0.4551935 0.4623084 0.4615207 3 5.211083 298.8019 0.7217690 3 4 12 21 0.4630960 0.4702023 0.4674367 3 7.930836 188.4287 0.7218012 6 4 251 259 0.6556879 0.6613916 0.6592574 2 7.931768 164.9032 0.7205635 7 2 260 266 0.6621030 0.6663733 0.6649484 2 5.198600 315.3379 0.7205402 9 2 439 445 0.8635986 0.8678911 0.8664590 2 5.243325 342.9002 0.7123940 10 4 446 452 0.8700267 0.8742984 0.8728745 2 7.968375 196.6034 0.7114850 jfcv2 co2slp o2slp co2sd o2sd 1 1.123960 -1.925190e-04 -3.1292512 0.0003202172 2.523601 2 1.124695 -2.507205e-03 -20.1316475 0.0028792993 22.833902 3 1.124753 -1.935099e-03 -2.7181417 0.0054738560 23.777171 6 1.125228 7.842244e-05 0.3917436 0.0012414889 13.113414 7 1.125291 1.243869e-03 6.4516746 0.0020255208 12.132174 9 1.126220 7.171322e-04 -8.0968993 0.0013802457 20.809140 10 1.126000 7.740885e-04 5.8546624 0.0012861947 17.101150 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.567 co2l1 = 4.465 co2l0 = -0.005" [1] "co2l0 = -170.78 co2l1 = 0.25" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "37 out of 65 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "28 out of 480 1-min values rejected as stack air" [1] "28 out of 480 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"