[1] "2025-04-30 02:45:14 MDT" [1] "1704" "170421" "d111" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170421a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 40180 63 [1] 40180 [1] 40180 [1] "testing skipping spike filter" [1] 40180 [1] 40180 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:45:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.094, ave o2scale2 = 0.879" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "82 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.095, ave o2scale2 = 0.879" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "85 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:45:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:45:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:45:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:45:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 85 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 42 row(s) with low FLWTA" [1] "Removed 5 row(s) with variable TFCELL" [1] "TEMP: 535 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:45:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.485 co2off = 366 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.95 minutes" [1] "Average Cal: 7.2 minutes" [1] "Shortest Cal: 3.4 minutes" [1] "Longest Cal: 7.96 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 1 4 1 4 0.5341790 0.5365419 0.5361481 1 8.260562 161.6241 0.9120370 3 4 203 210 0.7241822 0.7297129 0.7277395 2 8.282948 154.6202 0.9141177 4 2 211 218 0.7305005 0.7360226 0.7340499 2 5.559823 315.8933 0.9142303 6 2 452 459 0.9325253 0.9380473 0.9360754 3 5.561656 320.4438 0.9144109 7 4 460 467 0.9388349 0.9443483 0.9423792 3 8.278177 171.6734 0.9141964 8 3 468 475 0.9451359 0.9506666 0.9502728 3 4.760292 316.4853 0.9140178 jfcv2 co2slp o2slp co2sd o2sd 1 1.139377 -1.432717e-03 18.097603 0.001149049 14.514393 3 1.138515 3.288086e-04 2.488810 0.001759091 6.161333 4 1.138695 7.365792e-05 2.019061 0.002491679 4.677874 6 1.137932 1.437988e-04 7.650743 0.001551587 26.238611 7 1.137655 1.558734e-04 5.921618 0.001769276 14.452794 8 1.137460 9.730372e-04 5.965172 0.003215360 4.784106 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.039 co2l1 = 4.472 co2l0 = 0.407" [1] "co2l0 = -161.9 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "19 out of 471 1-min values rejected as stack air" [1] "19 out of 471 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"