[1] "2025-04-30 02:44:56 MDT" [1] "1704" "170420" "d110" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170420a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 59858 63 [1] 59858 [1] 59858 [1] "testing skipping spike filter" [1] 59858 [1] 59858 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:44:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.108, ave o2scale2 = 0.893" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.108, ave o2scale2 = 0.893" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:44:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:44:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:45:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:45:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 26 row(s) with low FLWTA" [1] "TEMP: 935 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:45:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.46 co2off = 367.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.69 minutes" [1] "Shortest Cal: 4.1 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 159 167 0.1304963 0.1361972 0.1340558 2 8.359616 157.5640 0.9014521 3 2 168 176 0.1369088 0.1425985 0.1404651 2 5.630741 314.4969 0.9015770 5 2 450 454 0.3383778 0.3412219 0.3405109 3 5.606021 315.3806 0.9021070 6 4 455 463 0.3447785 0.3504763 0.3483420 3 8.352679 138.8200 0.9020120 7 3 464 472 0.3511878 0.3568852 0.3561712 3 4.801652 311.4117 0.9020212 9 4 736 744 0.5462368 0.5519272 0.5497932 2 8.330134 155.7829 0.9027456 10 2 745 753 0.5526386 0.5583347 0.5561989 2 5.584902 319.5077 0.9028252 jfcv2 co2slp o2slp co2sd o2sd 2 1.120292 2.633293e-03 0.7868547 0.0060239786 7.280490 3 1.120393 2.646174e-03 2.2207412 0.0058740501 6.504785 5 1.120706 5.494087e-04 3.0103923 0.0005807233 6.729514 6 1.120319 9.084841e-04 -2.0944686 0.0031697686 12.359226 7 1.120548 -9.841345e-05 6.5047498 0.0010147718 6.701712 9 1.119951 1.932794e-03 2.8531257 0.0043363514 7.420017 10 1.119938 2.942197e-04 0.5724889 0.0015695081 6.025634 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.959 co2l1 = 4.442 co2l0 = -0.041" [1] "co2l0 = -157.98 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "95 out of 235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "140 out of 830 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "140 out of 830 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"