[1] "2025-04-30 02:43:54 MDT" [1] "1704" "170418" "d108" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170418a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:43:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.097, ave o2scale2 = 0.887" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "35 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.097, ave o2scale2 = 0.887" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "36 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:43:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:43:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:44:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:44:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 36 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1367 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:44:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.455 co2off = 374.73 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.05 minutes" [1] "Shortest Cal: 6.15 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 139 147 0.1017410 0.1074417 0.1052986 2 8.169170 157.4177 0.9141968 3 2 148 156 0.1081538 0.1138434 0.1117099 2 5.420830 308.0337 0.9142509 5 2 423 431 0.3096072 0.3152986 0.3131642 3 5.470241 319.0264 0.9139395 6 4 432 438 0.3174381 0.3217099 0.3202871 3 8.225475 155.1301 0.9131359 7 3 439 447 0.3224215 0.3281207 0.3274033 3 4.680080 292.1222 0.9131618 9 4 707 715 0.5176027 0.5232962 0.5211611 2 8.249384 156.4250 0.9121916 10 2 716 724 0.5240078 0.5297063 0.5275688 2 5.520857 321.9698 0.9125642 13 2 990 998 0.7255842 0.7312927 0.7291550 3 5.480438 330.5443 0.9106532 14 4 999 1007 0.7320044 0.7377030 0.7355633 3 8.217107 153.2565 0.9103878 15 3 1008 1016 0.7384209 0.7441135 0.7434020 3 4.671616 321.8528 0.9105626 17 4 1277 1285 0.9335894 0.9392916 0.9371517 2 8.252045 161.8893 0.9051030 18 2 1286 1294 0.9400034 0.9456958 0.9435615 2 5.506179 320.2927 0.9051109 jfcv2 co2slp o2slp co2sd o2sd 2 1.129507 -8.201709e-04 1.0221869 0.002271516 4.2120668 3 1.129636 -5.886618e-05 -2.8711742 0.001818136 17.3233200 5 1.129868 2.956549e-03 2.3688991 0.006807474 6.3327285 6 1.129442 -8.358295e-04 -2.1634791 0.001814977 8.5325022 7 1.129380 -1.361416e-03 -0.3102530 0.003641613 0.7570224 9 1.128362 1.753336e-03 5.7421065 0.004662772 12.8928776 10 1.128836 1.617774e-03 0.4704055 0.003885020 3.5712559 13 1.127171 -1.530125e-03 10.3143741 0.003570350 23.3035645 14 1.126912 5.892832e-04 0.7934109 0.002133169 5.2797408 15 1.127005 3.267712e-04 19.0676679 0.001192658 19.6248883 17 1.122818 2.169910e-03 0.8780834 0.004903856 3.2967105 18 1.122961 -2.395850e-04 1.3059129 0.001646267 3.6528933 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.538 co2l1 = 4.439 co2l0 = -0.184" [1] "co2l0 = -160.19 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "44 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "156 out of 1200 1-min values rejected as stack air" [1] "156 out of 1200 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"