[1] "2025-04-30 02:42:47 MDT" [1] "1704" "170416" "d106" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170416a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:42:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.072, ave o2scale2 = 0.874" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "38 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.072, ave o2scale2 = 0.874" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "40 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:42:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:42:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:43:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:43:13 MDT" [1] "reading in recalculated plot titles" [1] "Removed 40 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1364 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:43:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.492 co2off = 370.61 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.13 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 118 126 0.08540602 0.09109563 0.08896144 2 8.095250 152.2504 3 2 127 135 0.09180692 0.09749757 0.09536365 2 5.371125 320.4061 6 2 407 414 0.29457920 0.29955958 0.29778043 3 5.463208 318.1363 7 4 415 423 0.30027656 0.30596716 0.30383295 3 8.156813 154.1711 8 3 424 432 0.30667882 0.31237219 0.31166063 3 4.615000 312.5431 10 4 690 698 0.50175969 0.50745307 0.50531762 2 8.115107 151.7010 11 2 699 707 0.50816496 0.51386664 0.51173059 2 5.405571 325.1229 13 2 968 976 0.70971649 0.71540966 0.71327447 3 5.387938 317.9659 14 4 977 985 0.71612141 0.72181557 0.71968023 3 8.100705 149.7989 16 3 995 1003 0.72893377 0.73462882 0.73391708 3 4.583964 302.9899 18 4 1250 1258 0.91764268 0.92334653 0.92120815 2 8.081491 153.6851 19 2 1259 1267 0.92405883 0.92975084 0.92761634 2 5.363321 321.6885 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9315170 1.141064 -7.441062e-05 2.2180689 0.002734807 5.700541 3 0.9314638 1.141005 2.115627e-03 2.1224933 0.005397844 7.233275 6 0.9349660 1.145515 -1.035076e-03 -1.7177993 0.002455754 6.962243 7 0.9350491 1.145675 -2.303053e-03 1.9254831 0.007544659 4.428304 8 0.9352176 1.145745 -1.423182e-03 0.2938220 0.004106810 1.609907 10 0.9354526 1.146627 1.258574e-03 1.8756891 0.004880167 14.142952 11 0.9354954 1.146752 -1.129254e-04 2.1937412 0.001913299 12.017218 13 0.9338615 1.145316 1.295862e-03 0.1518863 0.004357853 4.947446 14 0.9334346 1.145109 2.221224e-03 5.2298593 0.005978337 16.427276 16 0.9334858 1.145159 7.075401e-04 -2.8525615 0.002834373 2.948499 18 0.9303231 1.142206 9.819112e-04 2.9698055 0.002210130 11.311581 19 0.9305256 1.142476 -2.963241e-04 2.4358483 0.002011500 7.073745 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.734 co2l1 = 4.476 co2l0 = 1.964" [1] "co2l0 = -157.79 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1187 1-min values rejected as stack air" [1] "0 out of 1187 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"