[1] "2025-04-30 02:42:32 MDT" [1] "1704" "170415" "d105" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170415a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 38541 63 [1] 38541 [1] 38541 [1] "testing skipping spike filter" [1] 38541 [1] 38541 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:42:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.058, ave o2scale2 = 0.869" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "27 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.058, ave o2scale2 = 0.869" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "27 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:42:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:42:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:42:40 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:42:41 MDT" [1] "reading in recalculated plot titles" [1] "Removed 27 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 613 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:42:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.603 co2off = 372.09 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.2 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 247 255 0.1757996 0.1814908 0.1793563 2 8.040723 152.7642 0.9452642 3 2 256 264 0.1822024 0.1879000 0.1857616 2 5.357375 321.8909 0.9453602 5 2 535 543 0.3837033 0.3894053 0.3872686 3 5.422866 313.4868 0.9430083 6 4 544 552 0.3901198 0.3958127 0.3936777 3 8.108777 151.3535 0.9429318 8 3 562 570 0.4029396 0.4086478 0.4079351 3 4.575089 303.4462 0.9428663 jfcv2 co2slp o2slp co2sd o2sd 2 1.150133 0.0018170573 1.1356073 0.004752858 6.668717 3 1.150250 0.0027008669 1.1891184 0.006347264 4.172910 5 1.148796 -0.0025409130 1.2520477 0.005960310 7.333443 6 1.148629 -0.0012393620 3.2916088 0.003511302 8.376518 8 1.148502 -0.0006998232 -0.6585422 0.001855053 1.787459 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.659 co2l1 = 4.503 co2l0 = 3.64" [1] "co2l0 = -158.19 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 542 1-min values rejected as stack air" [1] "0 out of 542 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"