[1] "2025-04-30 02:42:08 MDT" [1] "1704" "170414" "d104" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170414a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 72586 63 [1] 72586 [1] 72586 [1] "testing skipping spike filter" [1] 72586 [1] 72586 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:42:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.042, ave o2scale2 = 0.863" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "106 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.042, ave o2scale2 = 0.863" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "106 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:42:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:42:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:42:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:42:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 106 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 1098 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:42:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.564 co2off = 372.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 5 [4,] 6 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 202 210 0.3439129 0.3496046 0.3474703 1 7.939616 139.7489 0.9646295 5 2 481 489 0.5517715 0.5574706 0.5553325 3 5.286598 291.4059 0.9574886 6 4 490 498 0.5581824 0.5638782 0.5617419 3 7.991866 122.0584 0.9572116 7 3 499 507 0.5645905 0.5702891 0.5695773 3 4.506250 310.5549 0.9569556 9 4 769 777 0.7598181 0.7655170 0.7633795 1 8.024214 159.1910 0.9535078 13 2 1054 1062 0.9679290 0.9736258 0.9714894 3 5.336848 322.6768 0.9503448 14 4 1063 1071 0.9743381 0.9800387 0.9779016 3 8.029607 152.1426 0.9500757 15 3 1072 1080 0.9807513 0.9864540 0.9857381 3 4.515536 305.6372 0.9498711 jfcv2 co2slp o2slp co2sd o2sd 2 1.161293 2.043609e-03 10.424387 0.004634622 28.018004 5 1.157160 4.830097e-04 7.197293 0.002464555 22.868975 6 1.156972 7.989353e-04 -3.938163 0.002251859 23.031747 7 1.156937 -7.220326e-06 3.791406 0.002334635 3.927476 9 1.155741 5.298306e-03 1.748189 0.011878829 25.358942 13 1.154368 -2.222442e-03 1.202581 0.005040314 3.034815 14 1.154069 -7.260984e-04 3.843470 0.004247351 9.419815 15 1.154038 -2.609763e-03 15.873180 0.005913092 16.366420 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.033 co2l1 = 4.502 co2l0 = 0.324" [1] "co2l0 = -151.33 co2l1 = 0.196" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "117 out of 145 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "28 out of 952 1-min values rejected as stack air" [1] "28 out of 952 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"