[1] "2017-09-21 11:28:45 MDT" [1] "1704" [1] "reading in daily output files:" [1] "/net/www/docs/homes/stephens/GO2/1704/170414.html" [2] "/net/www/docs/homes/stephens/GO2/1704/170415.html" [3] "/net/www/docs/homes/stephens/GO2/1704/170416.html" [4] "/net/www/docs/homes/stephens/GO2/1704/170417.html" [5] "/net/www/docs/homes/stephens/GO2/1704/170418.html" [6] "/net/www/docs/homes/stephens/GO2/1704/170419.html" [7] "/net/www/docs/homes/stephens/GO2/1704/170420.html" [8] "/net/www/docs/homes/stephens/GO2/1704/170421.html" [9] "/net/www/docs/homes/stephens/GO2/1704/170422.html" [10] "/net/www/docs/homes/stephens/GO2/1704/170423.html" [11] "/net/www/docs/homes/stephens/GO2/1704/170424.html" [12] "/net/www/docs/homes/stephens/GO2/1704/170425.html" [13] "/net/www/docs/homes/stephens/GO2/1704/170426.html" [14] "/net/www/docs/homes/stephens/GO2/1704/170427.html" [15] "/net/www/docs/homes/stephens/GO2/1704/170428.html" [16] "/net/www/docs/homes/stephens/GO2/1704/170429.html" [17] "/net/www/docs/homes/stephens/GO2/1704/170430.html" [18] "/net/www/docs/homes/stephens/GO2/1704/170501.html" [19] "/net/www/docs/homes/stephens/GO2/1704/170502.html" [20] "/net/www/docs/homes/stephens/GO2/1704/170503.html" [21] "/net/www/docs/homes/stephens/GO2/1704/170504.html" [22] "/net/www/docs/homes/stephens/GO2/1704/170505.html" [23] "/net/www/docs/homes/stephens/GO2/1704/170506.html" [24] "/net/www/docs/homes/stephens/GO2/1704/170507.html" [25] "/net/www/docs/homes/stephens/GO2/1704/170508.html" [26] "/net/www/docs/homes/stephens/GO2/1704/170509.html" [27] "/net/www/docs/homes/stephens/GO2/1704/170510.html" [28] "/net/www/docs/homes/stephens/GO2/1704/170511.html" [29] "/net/www/docs/homes/stephens/GO2/1704/170512.html" [30] "/net/www/docs/homes/stephens/GO2/1704/170513.html" [31] "/net/www/docs/homes/stephens/GO2/1704/170514.html" [32] "/net/www/docs/homes/stephens/GO2/1704/170515.html" [33] "/net/www/docs/homes/stephens/GO2/1704/170516.html" [34] "/net/www/docs/homes/stephens/GO2/1704/170517.html" [35] "/net/www/docs/homes/stephens/GO2/1704/170518.html" [36] "/net/www/docs/homes/stephens/GO2/1704/170519.html" [37] "/net/www/docs/homes/stephens/GO2/1704/170520.html" [38] "/net/www/docs/homes/stephens/GO2/1704/170521.html" [39] "/net/www/docs/homes/stephens/GO2/1704/170522.html" [40] "/net/www/docs/homes/stephens/GO2/1704/170523.html" [41] "/net/www/docs/homes/stephens/GO2/1704/170524.html" [42] "/net/www/docs/homes/stephens/GO2/1704/170525.html" [43] "/net/www/docs/homes/stephens/GO2/1704/170526.html" [44] "/net/www/docs/homes/stephens/GO2/1704/170527.html" [45] "/net/www/docs/homes/stephens/GO2/1704/lmg_1704.html" [1] "/net/www/docs/homes/stephens/GO2/1704/170414.html" [2] "/net/www/docs/homes/stephens/GO2/1704/170415.html" [3] "/net/www/docs/homes/stephens/GO2/1704/170416.html" [4] "/net/www/docs/homes/stephens/GO2/1704/170417.html" [5] "/net/www/docs/homes/stephens/GO2/1704/170418.html" [6] "/net/www/docs/homes/stephens/GO2/1704/170419.html" [7] "/net/www/docs/homes/stephens/GO2/1704/170420.html" [8] "/net/www/docs/homes/stephens/GO2/1704/170421.html" [9] "/net/www/docs/homes/stephens/GO2/1704/170422.html" [10] "/net/www/docs/homes/stephens/GO2/1704/170423.html" [11] "/net/www/docs/homes/stephens/GO2/1704/170424.html" [12] "/net/www/docs/homes/stephens/GO2/1704/170425.html" [13] "/net/www/docs/homes/stephens/GO2/1704/170426.html" [14] "/net/www/docs/homes/stephens/GO2/1704/170427.html" [15] "/net/www/docs/homes/stephens/GO2/1704/170428.html" [16] "/net/www/docs/homes/stephens/GO2/1704/170429.html" [17] "/net/www/docs/homes/stephens/GO2/1704/170430.html" [18] "/net/www/docs/homes/stephens/GO2/1704/170501.html" [19] "/net/www/docs/homes/stephens/GO2/1704/170502.html" [20] "/net/www/docs/homes/stephens/GO2/1704/170503.html" [21] "/net/www/docs/homes/stephens/GO2/1704/170504.html" [22] "/net/www/docs/homes/stephens/GO2/1704/170505.html" [23] "/net/www/docs/homes/stephens/GO2/1704/170506.html" [24] "/net/www/docs/homes/stephens/GO2/1704/170507.html" [25] "/net/www/docs/homes/stephens/GO2/1704/170508.html" [26] "/net/www/docs/homes/stephens/GO2/1704/170509.html" [27] "/net/www/docs/homes/stephens/GO2/1704/170510.html" [28] "/net/www/docs/homes/stephens/GO2/1704/170511.html" [29] "/net/www/docs/homes/stephens/GO2/1704/170512.html" [30] "/net/www/docs/homes/stephens/GO2/1704/170513.html" [31] "/net/www/docs/homes/stephens/GO2/1704/170514.html" [32] "/net/www/docs/homes/stephens/GO2/1704/170515.html" [33] "/net/www/docs/homes/stephens/GO2/1704/170516.html" [34] "/net/www/docs/homes/stephens/GO2/1704/170517.html" [35] "/net/www/docs/homes/stephens/GO2/1704/170518.html" [36] "/net/www/docs/homes/stephens/GO2/1704/170519.html" [37] "/net/www/docs/homes/stephens/GO2/1704/170520.html" [38] "/net/www/docs/homes/stephens/GO2/1704/170521.html" [39] "/net/www/docs/homes/stephens/GO2/1704/170522.html" [40] "/net/www/docs/homes/stephens/GO2/1704/170523.html" [41] "/net/www/docs/homes/stephens/GO2/1704/170524.html" [42] "/net/www/docs/homes/stephens/GO2/1704/170525.html" [43] "/net/www/docs/homes/stephens/GO2/1704/170526.html" [44] "/net/www/docs/homes/stephens/GO2/1704/170527.html" [1] "170414" "170527" [1] "170414" "170415" "170416" "170417" "170418" "170419" "170420" "170421" [9] "170422" "170423" "170424" "170425" "170426" "170427" "170428" "170429" [17] "170430" "170501" "170502" "170503" "170504" "170505" "170506" "170507" [25] "170508" "170509" "170510" "170511" "170512" "170513" "170514" "170515" [33] "170516" "170517" "170518" "170519" "170520" "170521" "170522" "170523" [41] "170524" "170525" "170526" "170527" [1] "000000" "999999" [1] "170414_mr_proc.txt, 170414_cal_periods.txt, 170414_cal_param.txt,1099jogs" [1] "170415_mr_proc.txt, 170415_cal_periods.txt, 170415_cal_param.txt,613jogs" [1] "170416_mr_proc.txt, 170416_cal_periods.txt, 170416_cal_param.txt,1366jogs" [1] "170417_mr_proc.txt, 170417_cal_periods.txt, 170417_cal_param.txt,1343jogs" [1] "170418_mr_proc.txt, 170418_cal_periods.txt, 170418_cal_param.txt,1372jogs" [1] "170419_mr_proc.txt, 170419_cal_periods.txt, 170419_cal_param.txt,1118jogs" [1] "170420_mr_proc.txt, 170420_cal_periods.txt, 170420_cal_param.txt,935jogs" [1] "170421_mr_proc.txt, 170421_cal_periods.txt, 170421_cal_param.txt,540jogs" [1] "170422_mr_proc.txt, 170422_cal_periods.txt, 170422_cal_param.txt,538jogs" [1] "Output file empty for 170423" [1] "Output file empty for 170424" [1] "170425_mr_proc.txt, 170425_cal_periods.txt, 170425_cal_param.txt,226jogs" [1] "170426_mr_proc.txt, 170426_cal_periods.txt, 170426_cal_param.txt,1094jogs" [1] "170427_mr_proc.txt, 170427_cal_periods.txt, 170427_cal_param.txt,1117jogs" [1] "170428_mr_proc.txt, 170428_cal_periods.txt, 170428_cal_param.txt,1277jogs" [1] "170429_mr_proc.txt, 170429_cal_periods.txt, 170429_cal_param.txt,568jogs" [1] "Output file empty for 170430" [1] "Output file empty for 170501" [1] "Output file empty for 170502" [1] "Output file empty for 170503" [1] "Output file empty for 170504" [1] "Output file empty for 170505" [1] "Output file empty for 170506" [1] "Output file empty for 170507" [1] "Output file empty for 170508" [1] "Output file empty for 170509" [1] "Output file empty for 170510" [1] "170511_mr_proc.txt, 170511_cal_periods.txt, 170511_cal_param.txt,1390jogs" [1] "170512_mr_proc.txt, 170512_cal_periods.txt, 170512_cal_param.txt,1403jogs" [1] "170513_mr_proc.txt, 170513_cal_periods.txt, 170513_cal_param.txt,1397jogs" [1] "170514_mr_proc.txt, 170514_cal_periods.txt, 170514_cal_param.txt,995jogs" [1] "170515_mr_proc.txt, 170515_cal_periods.txt, 170515_cal_param.txt,1266jogs" [1] "170516_mr_proc.txt, 170516_cal_periods.txt, 170516_cal_param.txt,1403jogs" [1] "170517_mr_proc.txt, 170517_cal_periods.txt, 170517_cal_param.txt,1339jogs" [1] "170518_mr_proc.txt, 170518_cal_periods.txt, 170518_cal_param.txt,1233jogs" [1] "170519_mr_proc.txt, 170519_cal_periods.txt, 170519_cal_param.txt,1330jogs" [1] "170520_mr_proc.txt, 170520_cal_periods.txt, 170520_cal_param.txt,1284jogs" [1] "170521_mr_proc.txt, 170521_cal_periods.txt, 170521_cal_param.txt,1364jogs" [1] "170522_mr_proc.txt, 170522_cal_periods.txt, 170522_cal_param.txt,1258jogs" [1] "170523_mr_proc.txt, 170523_cal_periods.txt, 170523_cal_param.txt,1400jogs" [1] "170524_mr_proc.txt, 170524_cal_periods.txt, 170524_cal_param.txt,1366jogs" [1] "170525_mr_proc.txt, 170525_cal_periods.txt, 170525_cal_param.txt,1373jogs" [1] "170526_mr_proc.txt, 170526_cal_periods.txt, 170526_cal_param.txt,1393jogs" [1] "170527_mr_proc.txt, 170527_cal_periods.txt, 170527_cal_param.txt,989jogs" [1] "170414" "170527" "d104" "d147" [1] "Calculating derived concentration values" [1] "2017-09-21 11:30:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.965, ave o2scale2 = 0.892" [1] "redoing deltadiff calc" [1] "reading in medium-rate plot titles" [1] "Plotting 1-minute data" [1] "2017-09-21 11:31:35 MDT" [1] "Plotting O2 and CO2 concentration data" [1] "2017-09-21 11:32:25 MDT" [1] "2017-09-21 11:32:36 MDT" [1] "Reading in cylinder log" Read 74 records [1] "Finding cylinder IDs" Read 428 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.67 O2 = -502.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 408.84 O2 = -707.8" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.14 O2 = -661.5" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Plotting jog shapes" [1] "1704 Valve transient for Line 1 after Cal = -0.19 , -0.07 , 0 , 0 , 0 n = 122" [1] "1704 Valve transient for Line 2 after Line 1 = -0.08 , 1.22 , 4.14 , 10.84 , 19.05 n = 1" [1] "1704 Valve transient for Line 2 after Cal = -0.42 , -0.24 , -0.06 , -0.08 , 0 n = 3" [1] "1704 Valve transient for Line 1 after HS = -0.22 , -0.13 , -0.02 , -0.01 , 0 n = 41" [1] "1704 Valve transient for Line 1 after MS = -0.26 , -0.1 , 0 , 0 , -0.01 n = 58" [1] "1704 Valve transient for Line 1 after LS = -0.33 , -0.26 , -0.31 , -0.52 , -0.34 n = 2" [1] "1704 Valve transient for Line 1 after LT = 1.79 , 1.25 , 0.44 , 0.11 , 0.08 n = 22" [1] "1704 Valve transient for Line 2 after HS = -0.52 , -0.44 , -0.36 , -0.35 , 0.17 n = 1" [1] "1704 Valve transient for Line 2 after MS = -0.42 , -0.24 , -0.06 , -0.08 , -0.1 n = 1" [1] "1704 Valve transient for Line 2 after LT = 2.24 , 1.58 , 0.47 , 0.02 , 0 n = 1" [1] "1704 Valve transient for HS after Line 1 = 0.22 , 0.11 , -0.01 , -0.01 , 0 n = 43" [1] "1704 Valve transient for HS after Line 2 = 0.2 , 0.1 , -0.01 , 0 , 0 n = 1" [1] "1704 Valve transient for HS after MS = -0.57 , -0.29 , 0.01 , 0.02 , 0.02 n = 1" [1] "1704 Valve transient for HS after LS = 1.82 , 0.91 , 0 , 0 , 0 n = 48" [1] "1704 Valve transient for MS after Line 1 = 0.35 , 0.17 , -0.01 , -0.02 , -0.02 n = 2" [1] "1704 Valve transient for MS after LS = 2.43 , 1.23 , 0.02 , 0.01 , 0 n = 31" [1] "1704 Valve transient for MS after LT = 2.05 , 1.02 , 0.01 , 0 , 0 n = 15" [1] "1704 Valve transient for LS after Line 1 = -1.87 , -0.95 , -0.02 , -0.01 , -0.01 n = 42" [1] "1704 Valve transient for LS after Line 2 = -1.12 , -0.59 , -0.06 , -0.05 , -0.04 n = 2" [1] "1704 Valve transient for LS after HS = -1.9 , -0.98 , -0.01 , -0.01 , 0 n = 43" [1] "1704 Valve transient for LT after HS = -0.39 , -0.19 , 0 , 0 , 0 n = 17" [1] "1704 Valve transient for LT after LS = 0.29 , 0.17 , 0.03 , 0.01 , 0.01 n = 15" [1] "Plotting calibration sds and slopes" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "798 out of 10555 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "9757 out of 30677 1-min values rejected as stack air" [1] "9477 out of 29806 Line 1 1-min values rejected as stack air" [1] "280 out of 871 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "LMG1704loxy.d104" [1] "LMG1704loxy.d105" [1] "LMG1704loxy.d106" [1] "LMG1704loxy.d107" [1] "LMG1704loxy.d108" [1] "LMG1704loxy.d109" [1] "LMG1704loxy.d111" [1] "LMG1704loxy.d112" [1] "LMG1704loxy.d113" [1] "LMG1704loxy.d114" [1] "LMG1704loxy.d115" [1] "LMG1704loxy.d117" [1] "LMG1704loxy.d118" [1] "LMG1704loxy.d119" [1] "LMG1704loxy.d122" [1] "LMG1704loxy.d123" [1] "LMG1704loxy.d124" [1] "LMG1704loxy.d125" [1] "LMG1704loxy.d126" [1] "LMG1704loxy.d127" [1] "LMG1704loxy.d128" [1] "LMG1704loxy.d129" [1] "LMG1704loxy.d130" [1] "LMG1704loxy.d137" [1] "LMG1704loxy.d138" [1] "LMG1704loxy.d139" [1] "LMG1704loxy.d140" [1] "LMG1704loxy.d141" [1] "LMG1704loxy.d142" [1] "LMG1704loxy.d144" [1] "LMG1704loxy.d145" [1] "LMG1704loxy.d146" [1] "LMG1704loxy.d147" [1] "calculating wind bins" [1] "aggregating 10 min SDs" [1] "aggregating O2s" [1] "calculating anomalous O2s" [1] "aggregating anomalous O2s" [1] "aggregating anomalous O2s diurnally" [,1] [,2] [1,] 92.5 1.3374486 [2,] 97.5 1.4403292 [3,] 102.5 1.7489712 [4,] 107.5 1.6460905 [5,] 112.5 1.0288066 [6,] 117.5 1.9547325 [7,] 122.5 1.4403292 [8,] 127.5 1.2345679 [9,] 132.5 1.2345679 [10,] 137.5 1.3374486 [11,] 142.5 1.0288066 [12,] 147.5 1.5432099 [13,] 152.5 0.5144033 [14,] 157.5 0.7201646 [15,] 162.5 0.4115226 [16,] 167.5 1.2345679 [17,] 172.5 0.4115226 [18,] 177.5 1.5432099 [19,] 182.5 1.3374486 [20,] 187.5 0.5144033 [21,] 192.5 1.9547325 [22,] 197.5 1.6460905 [23,] 202.5 0.4115226 [24,] 212.5 4.9382716 [25,] 217.5 0.5144033 [26,] 222.5 0.3086420 [27,] 227.5 0.7201646 [28,] 232.5 1.0288066 [29,] 237.5 0.3086420 [30,] 242.5 0.1028807 [31,] 247.5 0.1028807 [32,] 252.5 0.4115226 [33,] 257.5 0.1028807 [34,] 262.5 0.1028807 [35,] 267.5 0.4115226 [36,] 272.5 0.1028807 [37,] 277.5 0.4115226 [38,] 282.5 0.2057613 [39,] 287.5 0.2057613 [40,] 292.5 0.1028807 [41,] 302.5 0.0000000 [42,] 317.5 0.1028807 [43,] 332.5 0.1028807 [44,] 347.5 0.1028807 [45,] 352.5 0.1028807 [46,] 362.5 0.1028807 [47,] 382.5 0.2057613 [48,] 397.5 0.1028807 [49,] 402.5 0.1028807 [50,] 412.5 0.1028807 [51,] 417.5 0.2057613 [52,] 422.5 1.5432099 [53,] 427.5 1.5432099 [54,] 432.5 1.3374486 [55,] 437.5 1.6460905 [56,] 442.5 1.2345679 [57,] 447.5 1.8518519 [,1] [,2] [1,] 92.5 1.1316872 [2,] 97.5 1.2345679 [3,] 102.5 0.9259259 [4,] 107.5 1.2345679 [5,] 112.5 1.2345679 [6,] 117.5 0.8230453 [7,] 122.5 0.8230453 [8,] 127.5 0.7201646 [9,] 132.5 0.7201646 [10,] 137.5 0.7201646 [11,] 142.5 0.5144033 [12,] 152.5 0.6172840 [13,] 157.5 0.2057613 [14,] 162.5 0.0000000 [15,] 182.5 0.1028807 [16,] 192.5 0.4115226 [17,] 197.5 0.5144033 [18,] 202.5 0.3086420 [19,] 207.5 0.7201646 [20,] 212.5 0.8230453 [21,] 217.5 7.6131687 [22,] 222.5 1.7489712 [23,] 227.5 0.3086420 [24,] 232.5 0.4115226 [25,] 237.5 0.4115226 [26,] 242.5 0.2057613 [27,] 327.5 0.1028807 [28,] 337.5 0.4115226 [29,] 372.5 0.1028807 [30,] 377.5 0.1028807 [31,] 382.5 0.2057613 [32,] 387.5 0.2057613 [33,] 392.5 0.1028807 [34,] 397.5 0.6172840 [35,] 402.5 0.5144033 [36,] 407.5 0.1028807 [37,] 427.5 0.1028807 [38,] 432.5 0.2057613 [39,] 437.5 0.3086420 [40,] 442.5 0.8230453 [41,] 447.5 0.9259259 [,1] [,2] [1,] 112.5 0.2057613 [2,] 117.5 0.2057613 [3,] 122.5 0.5144033 [4,] 137.5 0.7201646 [5,] 142.5 0.7201646 [6,] 147.5 0.3086420 [7,] 152.5 0.2057613 [8,] 162.5 0.1028807 [9,] 167.5 0.4115226 [10,] 177.5 0.3086420 [11,] 182.5 0.2057613 [12,] 187.5 0.6172840 [13,] 197.5 0.0000000 [14,] 367.5 0.7201646 [15,] 372.5 0.7201646 [16,] 377.5 0.5144033 [17,] 382.5 0.7201646 [18,] 387.5 0.7201646 [19,] 392.5 0.7201646 [20,] 397.5 3.4979424 [21,] 402.5 0.8230453 [22,] 407.5 1.0288066 [23,] 412.5 0.7201646 [24,] 417.5 0.5144033 [25,] 422.5 0.2057613 [26,] 427.5 0.7201646 [27,] 432.5 0.4115226 [28,] 437.5 0.2057613 [29,] 442.5 0.1028807 [,1] [,2] [1,] 102.5 0.1028807 [2,] 137.5 0.3086420 [3,] 142.5 0.4115226 [4,] 147.5 0.3086420 [5,] 152.5 0.2057613 [6,] 162.5 0.2057613 [7,] 167.5 0.3086420 [8,] 172.5 0.2057613 [9,] 177.5 0.1028807 [10,] 397.5 3.1893004 [11,] 402.5 0.3086420 [1] "making cruise html" [1] "2017-09-21 11:34:04 MDT" [1] "plotting cyl pressures" [1] "LMG" [1] "making time-series html" [1] "making latitude gradient html" [1] "making html"