[1] "2025-04-30 02:40:59 MDT" [1] "1703" "170406" "d096" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170406a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 76080 63 [1] 76080 [1] 76080 [1] "testing skipping spike filter" [1] 76080 [1] 76080 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:41:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.092, ave o2scale2 = 0.877" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "141 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.092, ave o2scale2 = 0.877" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "139 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:41:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:41:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:41:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:41:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 139 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 543 row(s) with variable TFCELL" [1] "TEMP: 584 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:41:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.521 co2off = 373.68 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.95 minutes" [1] "Average Cal: 7.95 minutes" [1] "Shortest Cal: 7.94 minutes" [1] "Longest Cal: 7.96 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 20 27 0.5542770 0.5597999 0.5578302 2 7.676969 161.5206 0.9151905 3 2 28 35 0.5605876 0.5661057 0.5641331 2 5.074062 328.3548 0.9154147 6 2 284 291 0.7625309 0.7680530 0.7660798 3 5.367156 316.5616 0.9198804 7 4 292 299 0.7688407 0.7743541 0.7723850 3 8.077823 150.7746 0.9199655 8 3 300 307 0.7751418 0.7806725 0.7802787 3 4.558958 299.0905 0.9201197 10 4 548 555 0.9708438 0.9763749 0.9743920 2 8.073563 150.9332 0.9258519 11 2 556 563 0.9771626 0.9826762 0.9807071 2 5.385427 323.2870 0.9261667 jfcv2 co2slp o2slp co2sd o2sd 2 1.140733 0.0111248993 2.1985888 0.0236629573 10.920350 3 1.140992 0.0136223284 -3.0439391 0.0290295108 14.358574 6 1.145111 -0.0001017010 3.5236021 0.0008241947 8.892093 7 1.145198 -0.0003542480 -0.3894773 0.0008210290 9.927637 8 1.145371 -0.0003906985 -4.1051946 0.0016515460 3.292513 10 1.151613 0.0034633242 -2.3472120 0.0073931979 7.271940 11 1.152085 0.0021616242 5.8238665 0.0047973653 14.675442 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.848 co2l1 = 4.557 co2l0 = 0.948" [1] "co2l0 = -158.51 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "106 out of 215 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "109 out of 483 1-min values rejected as stack air" [1] "109 out of 483 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"